Analysis of interatomic Contacts of Structural Units in PDB entry:
1L6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1L6M entry

There are 3 chains in PDB entry 1L6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 4ASP 177
B
THR 4ASP 177
C
SER 5ASP 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1L6M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
96 100Right-handed 310
Helix 3
3
A
145 158Right-handed alpha
Helix 4
4
A
162 164Right-handed 310
Helix 5
5
B
12 16Right-handed 310
Helix 6
6
B
23 28Right-handed alpha
Helix 7
7
B
96 100Right-handed 310
Helix 8
8
B
147 158Right-handed alpha
Helix 9
9
B
162 164Right-handed 310
Helix 10
10
C
12 16Right-handed 310
Helix 11
11
C
23 28Right-handed alpha
Helix 12
12
C
96 100Right-handed 310
Helix 13
13
C
145 158Right-handed alpha
Helix 14
14
C
162 164Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 1L6M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 167first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
53 58anti-parallel
Strand 4
A
64 71anti-parallel
Strand 5
A
76 85anti-parallel
Strand 6
A
91 94anti-parallel
Strand 7
A
103 113anti-parallel
Strand 8
A
118 127anti-parallel
Strand 9
A
130 139anti-parallel
Strand 10
A
29 38anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
166 167first strand
Strand 2
B
29 38anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
75 85anti-parallel
Strand 5
B
91 94anti-parallel
Strand 6
B
103 113anti-parallel
Strand 7
B
118 127anti-parallel
Strand 8
B
130 139anti-parallel
Strand 9
B
29 38anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
166 167first strand
Strand 2
C
29 38anti-parallel
Strand 3
C
53 58anti-parallel
Strand 4
C
64 71anti-parallel
Strand 5
C
76 85anti-parallel
Strand 6
C
91 94anti-parallel
Strand 7
C
103 113anti-parallel
Strand 8
C
118 127anti-parallel
Strand 9
C
130 139anti-parallel
Strand 10
C
29 38anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il