Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1L8C entry
There are 2 chains in PDB entry 1L8C
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
ALA 1 | ARG 95 |
B
|
SER 99 | ASN 149 |
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There are 8
helices in PDB entry 1L8C. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 2 |
29 | Right-handed alpha |
Helix 2 |
2 | A
| 39 |
53 | Right-handed alpha |
Helix 3 |
3 | A
| 55 |
59 | Right-handed 310 |
Helix 4 |
4 | A
| 61 |
77 | Right-handed alpha |
Helix 5 |
5 | A
| 84 |
90 | Right-handed alpha |
Helix 6 |
6 | B
| 106 |
111 | Right-handed alpha |
Helix 7 |
7 | B
| 119 |
127 | Right-handed alpha |
Helix 8 |
8 | B
| 138 |
147 | Right-handed alpha |
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There are no sheets in PDB entry
1L8C
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il