Analysis of interatomic Contacts of Structural Units in PDB entry:
1LBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LBC entry

There are 3 chains in PDB entry 1LBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3CYS 261
B
 GLY 1CYS 261
C
 LYS 4CYS 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1LBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
2
A
27 30Right-handed 310
Helix 2
3
A
34 48Right-handed alpha
Helix 3
4
A
72 80Right-handed alpha
Helix 4
5
A
93 98Right-handed alpha
Helix 5
6
A
123 129Right-handed alpha
Helix 6
9
A
173 184Right-handed alpha
Helix 7
10
A
194 202Right-handed alpha
Helix 8
11
A
230 244Right-handed alpha
Helix 9
12
A
245 256Right-handed alpha
Helix 10
13
B
28 30Right-handed 310
Helix 11
14
B
34 48Right-handed alpha
Helix 12
15
B
72 80Right-handed alpha
Helix 13
16
B
93 98Right-handed alpha
Helix 14
17
B
123 129Right-handed alpha
Helix 15
18
B
141 150Right-handed alpha
Helix 16
19
B
152 165Right-handed alpha
Helix 17
20
B
173 184Right-handed alpha
Helix 18
21
B
194 202Right-handed alpha
Helix 19
22
B
230 244Right-handed alpha
Helix 20
23
B
245 256Right-handed alpha
Helix 21
24
C
22 26Right-handed 310
Helix 22
26
C
34 48Right-handed alpha
Helix 23
27
C
72 80Right-handed alpha
Helix 24
28
C
93 98Right-handed alpha
Helix 25
32
C
173 184Right-handed alpha
Helix 26
33
C
194 201Right-handed alpha
Helix 27
34
C
230 244Right-handed alpha
Helix 28
35
C
245 256Right-handed alpha
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There are 15 sheets in PDB entry 1LBC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
6 10parallel
Strand 3
A
85 86parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
32 33anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
223 225anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
218 220anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
188 193parallel
Strand 3
A
111 116anti-parallel
Strand 4
A
208 211anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
6 10parallel
Strand 3
B
85 86parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
32 33anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
223 225anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
218 220anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
188 193parallel
Strand 3
B
111 116anti-parallel
Strand 4
B
208 211anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
6 10parallel
Strand 3
C
85 86parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
32 33anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
223 225anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 109first strand
Strand 2
C
218 220anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 136first strand
Strand 2
C
188 193parallel
Strand 3
C
111 116anti-parallel
Strand 4
C
208 211anti-parallel
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