Analysis of interatomic Contacts of Structural Units in PDB entry:
1LM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LM5 entry

There are 2 chains in PDB entry 1LM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2616LYS 2811
B
 LEU 2613VAL 2808
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1LM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2632 2639Right-handed alpha
Helix 2
2
A
2643 2656Right-handed alpha
Helix 3
3
A
2670 2677Right-handed alpha
Helix 4
4
A
2681 2697Right-handed alpha
Helix 5
5
A
2708 2715Right-handed alpha
Helix 6
6
A
2719 2733Right-handed alpha
Helix 7
7
A
2738 2742Right-handed 310
Helix 8
8
A
2746 2753Right-handed alpha
Helix 9
9
A
2757 2766Right-handed alpha
Helix 10
10
A
2767 2770Right-handed 310
Helix 11
11
A
2784 2792Right-handed alpha
Helix 12
12
B
2632 2639Right-handed alpha
Helix 13
13
B
2643 2656Right-handed alpha
Helix 14
14
B
2670 2677Right-handed alpha
Helix 15
15
B
2681 2697Right-handed alpha
Helix 16
16
B
2708 2715Right-handed alpha
Helix 17
17
B
2719 2733Right-handed alpha
Helix 18
18
B
2746 2753Right-handed alpha
Helix 19
19
B
2757 2766Right-handed alpha
Helix 20
20
B
2767 2770Right-handed 310
Helix 21
21
B
2784 2792Right-handed alpha
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There are 7 sheets in PDB entry 1LM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2629 2631first strand
Strand 2
A
2619 2624anti-parallel
Strand 3
A
2801 2805parallel
Strand 4
A
2793 2794anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2660 2661first strand
Strand 2
A
2668 2669anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2774 2775first strand
Strand 2
A
2782 2783anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2629 2631first strand
Strand 2
B
2619 2624anti-parallel
Strand 3
B
2801 2805parallel
Strand 4
B
2793 2794anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2660 2661first strand
Strand 2
B
2668 2669anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2737 2738first strand
Strand 2
B
2743 2744anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2774 2775first strand
Strand 2
B
2782 2783anti-parallel
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