Analysis of interatomic Contacts of Structural Units in PDB entry:
1LML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LML entry

There is 1 chain in PDB entry 1LML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 100ASP 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1LML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
116 119Right-handed alpha
Helix 2
2
A
144 146Right-handed 310
Helix 3
3
A
150 158Right-handed alpha
Helix 4
4
A
160 169Right-handed alpha
Helix 5
5
A
191 193Right-handed 310
Helix 6
6
A
198 202Right-handed alpha
Helix 7
7
A
247 249Right-handed 310
Helix 8
8
A
256 269Right-handed alpha
Helix 9
9
A
274 279Right-handed alpha
Helix 10
10
A
289 291Right-handed 310
Helix 11
11
A
302 312Right-handed alpha
Helix 12
12
A
356 364Right-handed alpha
Helix 13
13
A
372 374Right-handed 310
Helix 14
14
A
386 390Right-handed alpha
Helix 15
15
A
435 437Right-handed 310
Helix 16
16
A
470 472Right-handed 310
Helix 17
17
A
475 480Right-handed alpha
Helix 18
18
A
543 545Right-handed 310
Helix 19
19
A
561 565Right-handed alpha
Helix 20
20
A
569 573Right-handed alpha
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There are 6 sheets in PDB entry 1LML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
210 215parallel
Strand 3
A
240 244parallel
Strand 4
A
226 231anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
139 141anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
296 299anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
458 460anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 491first strand
Strand 2
A
508 516anti-parallel
Strand 3
A
521 525anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 542first strand
Strand 2
A
555 557anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il