Analysis of interatomic Contacts of Structural Units in PDB entry:
1LRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LRM entry

There is 1 chain in PDB entry 1LRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 118LEU 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1LRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
124 132Right-handed 310
Helix 2
2
A
139 143Right-handed 310
Helix 3
3
A
151 168Right-handed alpha
Helix 4
4
A
180 202Right-handed alpha
Helix 5
5
A
203 217Right-handed alpha
Helix 6
6
A
226 239Right-handed alpha
Helix 7
7
A
250 259Right-handed alpha
Helix 8
8
A
282 290Right-handed alpha
Helix 9
9
A
292 295Right-handed 310
Helix 10
10
A
296 311Right-handed alpha
Helix 11
11
A
314 327Right-handed alpha
Helix 12
12
A
344 349Right-handed alpha
Helix 13
13
A
350 357Right-handed alpha
Helix 14
14
A
368 373Right-handed alpha
Helix 15
15
A
391 404Right-handed alpha
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There are 3 sheets in PDB entry 1LRM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
262 265parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 342first strand
Strand 2
A
333 336anti-parallel
Strand 3
A
385 389parallel
Strand 4
A
363 366parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
420 424anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il