Analysis of interatomic Contacts of Structural Units in PDB entry:
1LVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LVK entry

There is 1 chain in PDB entry 1LVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 2GLU 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1LVK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
25 28Right-handed 310
Helix 3
3
A
74 76Right-handed 310
Helix 4
4
A
83 85Right-handed 310
Helix 5
5
A
91 93Right-handed 310
Helix 6
6
A
99 112Right-handed alpha
Helix 7
7
A
137 143Right-handed alpha
Helix 8
8
A
148 150Right-handed 310
Helix 9
9
A
155 169Right-handed alpha
Helix 10
10
A
185 200Right-handed alpha
Helix 11
11
A
210 226Right-handed alpha
Helix 12
12
A
265 268Right-handed 310
Helix 13
13
A
279 287Right-handed alpha
Helix 14
14
A
290 296Right-handed alpha
Helix 15
15
A
301 303Right-handed 310
Helix 16
16
A
320 334Right-handed alpha
Helix 17
17
A
338 356Right-handed alpha
Helix 18
18
A
373 382Right-handed alpha
Helix 19
19
A
386 394Right-handed alpha
Helix 20
20
A
411 441Right-handed alpha
Helix 21
21
A
466 497Right-handed alpha
Helix 22
22
A
510 518Right-handed alpha
Helix 23
23
A
525 534Right-handed alpha
Helix 24
24
A
540 551Right-handed alpha
Helix 25
25
A
584 589Right-handed alpha
Helix 26
26
A
594 602Right-handed alpha
Helix 27
27
A
606 613Right-handed alpha
Helix 28
28
A
615 618Right-handed alpha
Helix 29
29
A
630 647Right-handed alpha
Helix 30
30
A
669 678Right-handed alpha
Helix 31
31
A
681 690Right-handed alpha
Helix 32
32
A
698 708Right-handed alpha
Helix 33
33
A
719 730Right-handed alpha
Helix 34
34
A
734 736Right-handed 310
Helix 35
35
A
750 755Right-handed alpha
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There are 5 sheets in PDB entry 1LVK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 37first strand
Strand 2
A
48 55anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
69 73anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
116 119first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
649 656parallel
Strand 4
A
173 179parallel
Strand 5
A
448 456parallel
Strand 6
A
240 247anti-parallel
Strand 7
A
253 261anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
397 399first strand
Strand 2
A
404 406anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
558 560first strand
Strand 2
A
567 572anti-parallel
Strand 3
A
575 580anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
694 697first strand
Strand 2
A
743 746anti-parallel
Strand 3
A
737 739anti-parallel
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