Analysis of interatomic Contacts of Structural Units in PDB entry:
1LWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LWP entry

There is 1 chain in PDB entry 1LWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1LEU 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1LWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 33Right-handed alpha
Helix 2
2
A
41 51Right-handed alpha
Helix 3
3
A
86 97Right-handed alpha
Helix 4
4
A
161 168Right-handed alpha
Helix 5
5
A
200 222Right-handed alpha
Helix 6
6
A
229 231Right-handed 310
Helix 7
7
A
237 239Right-handed 310
Helix 8
8
A
247 252Right-handed alpha
Helix 9
9
A
255 260Right-handed alpha
Helix 10
10
A
272 279Right-handed alpha
Helix 11
11
A
282 299Right-handed alpha
Helix 12
12
A
310 321Right-handed alpha
Helix 13
13
A
331 342Right-handed alpha
Helix 14
14
A
351 361Right-handed alpha
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There are 4 sheets in PDB entry 1LWP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
10 14anti-parallel
Strand 3
A
21 25anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
82 84anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 136first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
151 157anti-parallel
Strand 4
A
186 189anti-parallel
Strand 5
A
176 180anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
241 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il