Analysis of interatomic Contacts of Structural Units in PDB entry:
1M9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M9H entry

There is 1 chain in PDB entry 1M9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 2ASP 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1M9H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
25 40Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
52 63Right-handed alpha
Helix 4
4
A
66 70Right-handed 310
Helix 5
5
A
77 81Right-handed 310
Helix 6
6
A
84 98Right-handed alpha
Helix 7
7
A
111 115Right-handed 310
Helix 8
8
A
116 130Right-handed alpha
Helix 9
9
A
142 154Right-handed alpha
Helix 10
10
A
170 181Right-handed alpha
Helix 11
11
A
190 194Right-handed 310
Helix 12
12
A
200 209Right-handed alpha
Helix 13
13
A
213 225Right-handed alpha
Helix 14
14
A
235 244Right-handed alpha
Helix 15
15
A
251 260Right-handed alpha
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There are 2 sheets in PDB entry 1M9H. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
5 7first strand
Strand 2
A
13 15anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 20first strand
Strand 2
A
43 45parallel
Strand 3
A
71 76parallel
Strand 4
A
102 107parallel
Strand 5
A
133 139parallel
Strand 6
A
159 163parallel
Strand 7
A
183 187parallel
Strand 8
A
228 229parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il