Analysis of interatomic Contacts of Structural Units in PDB entry:
1M9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M9Y entry

There are 8 chains in PDB entry 1M9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 165
B
 VAL 2GLU 165
C
 PRO 1SER 146
D
 HIS 12SER 146
E
 MET 1GLU 165
F
 VAL 2GLU 165
G
 PRO 1SER 146
H
 HIS 12SER 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1M9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
A
119 123Right-handed 310
Helix 3
3
A
135 144Right-handed alpha
Helix 4
4
B
29 42Right-handed alpha
Helix 5
5
B
119 123Right-handed 310
Helix 6
6
B
135 144Right-handed alpha
Helix 7
7
C
16 31Right-handed alpha
Helix 8
8
C
35 44Right-handed alpha
Helix 9
9
C
48 58Right-handed alpha
Helix 10
10
C
62 84Right-handed alpha
Helix 11
11
C
100 105Right-handed alpha
Helix 12
12
C
110 119Right-handed alpha
Helix 13
13
C
125 142Right-handed alpha
Helix 14
14
C
143 145Right-handed 310
Helix 15
15
D
16 30Right-handed alpha
Helix 16
16
D
35 44Right-handed alpha
Helix 17
17
D
48 58Right-handed alpha
Helix 18
18
D
62 84Right-handed alpha
Helix 19
19
D
100 105Right-handed alpha
Helix 20
20
D
110 120Right-handed alpha
Helix 21
21
D
125 146Right-handed alpha
Helix 22
22
E
29 42Right-handed alpha
Helix 23
23
E
119 123Right-handed 310
Helix 24
24
E
135 144Right-handed alpha
Helix 25
25
F
29 42Right-handed alpha
Helix 26
26
F
119 123Right-handed 310
Helix 27
27
F
135 144Right-handed alpha
Helix 28
28
G
16 31Right-handed alpha
Helix 29
29
G
35 44Right-handed alpha
Helix 30
30
G
48 58Right-handed alpha
Helix 31
31
G
62 84Right-handed alpha
Helix 32
32
G
100 105Right-handed alpha
Helix 33
33
G
110 120Right-handed alpha
Helix 34
34
G
125 143Right-handed alpha
Helix 35
35
H
16 31Right-handed alpha
Helix 36
36
H
35 44Right-handed alpha
Helix 37
37
H
48 58Right-handed alpha
Helix 38
38
H
62 83Right-handed alpha
Helix 39
39
H
100 105Right-handed alpha
Helix 40
40
H
110 120Right-handed alpha
Helix 41
41
H
125 146Right-handed alpha
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There are 6 sheets in PDB entry 1M9Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
61 64anti-parallel
Strand 3
A
112 115anti-parallel
Strand 4
A
97 100anti-parallel
Strand 5
A
128 132anti-parallel
Strand 6
A
15 24anti-parallel
Strand 7
A
5 12anti-parallel
Strand 8
A
156 164anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
61 64anti-parallel
Strand 3
B
112 115anti-parallel
Strand 4
B
97 100anti-parallel
Strand 5
B
128 134anti-parallel
Strand 6
B
15 24anti-parallel
Strand 7
B
5 12anti-parallel
Strand 8
B
156 163anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
10 12anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 57first strand
Strand 2
E
61 64anti-parallel
Strand 3
E
112 115anti-parallel
Strand 4
E
97 100anti-parallel
Strand 5
E
128 132anti-parallel
Strand 6
E
15 24anti-parallel
Strand 7
E
5 12anti-parallel
Strand 8
E
156 164anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
55 57first strand
Strand 2
F
61 64anti-parallel
Strand 3
F
112 115anti-parallel
Strand 4
F
97 100anti-parallel
Strand 5
F
128 134anti-parallel
Strand 6
F
15 24anti-parallel
Strand 7
F
5 12anti-parallel
Strand 8
F
156 165anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
2 3first strand
Strand 2
G
11 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il