Analysis of interatomic Contacts of Structural Units in PDB entry:
1MHW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MHW entry

There are 12 chains in PDB entry 1MHW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 24
A
 TRP 26SER 174
C
 ASN 180VAL 220
B
 ALA 1SER 24
B
 TRP 26SER 174
D
 ASN 180VAL 220
E
 CYS 42CYS 42
F
 CYS 42CYS 42
G
 CYS 42CYS 42
G
 TYR 44TYR 44
H
 CYS 42CYS 42
H
 TYR 44TYR 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1MHW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 11Right-handed 310
Helix 2
2
A
24 43Right-handed alpha
Helix 3
3
A
49 57Right-handed alpha
Helix 4
4
A
63 67Right-handed 310
Helix 5
5
A
69 81Right-handed alpha
Helix 6
6
A
101 103Right-handed 310
Helix 7
7
A
118 129Right-handed alpha
Helix 8
8
A
140 145Right-handed alpha
Helix 9
9
C
207 211Right-handed 310
Helix 10
10
B
8 11Right-handed 310
Helix 11
11
B
24 43Right-handed alpha
Helix 12
12
B
49 57Right-handed alpha
Helix 13
13
B
58 61Right-handed 310
Helix 14
14
B
63 67Right-handed 310
Helix 15
15
B
69 81Right-handed alpha
Helix 16
16
B
101 103Right-handed 310
Helix 17
17
B
118 130Right-handed alpha
Helix 18
18
B
140 145Right-handed alpha
Helix 19
19
D
207 211Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 1MHW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
C
198 202parallel
Strand 3
C
181 186anti-parallel
Strand 4
A
163 172anti-parallel
Strand 5
A
5 6anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
C
198 202parallel
Strand 3
C
181 186anti-parallel
Strand 4
A
163 172anti-parallel
Strand 5
A
132 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
105 107anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
C
216 218anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
D
198 202parallel
Strand 3
D
181 186anti-parallel
Strand 4
B
163 172anti-parallel
Strand 5
B
5 6anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
D
198 202parallel
Strand 3
D
181 186anti-parallel
Strand 4
B
163 172anti-parallel
Strand 5
B
132 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 84first strand
Strand 2
B
105 107anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
D
216 218anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il