Analysis of interatomic Contacts of Structural Units in PDB entry:
1MJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MJF entry

There are 2 chains in PDB entry 1MJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 3GLN 278
B
ALA 3GLN 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1MJF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
57 72Right-handed alpha
Helix 2
2
A
86 93Right-handed alpha
Helix 3
3
A
106 117Right-handed alpha
Helix 4
4
A
122 129Right-handed alpha
Helix 5
5
A
141 149Right-handed alpha
Helix 6
6
A
171 181Right-handed alpha
Helix 7
7
A
198 213Right-handed alpha
Helix 8
8
A
246 252Right-handed alpha
Helix 9
9
A
259 268Right-handed 310
Helix 10
10
A
270 278Right-handed alpha
Helix 11
11
B
57 72Right-handed alpha
Helix 12
12
B
86 93Right-handed alpha
Helix 13
13
B
106 117Right-handed alpha
Helix 14
14
B
122 129Right-handed alpha
Helix 15
15
B
171 181Right-handed alpha
Helix 16
16
B
198 211Right-handed alpha
Helix 17
17
B
246 251Right-handed alpha
Helix 18
18
B
259 268Right-handed 310
Helix 19
19
B
270 278Right-handed alpha
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There are 5 sheets in PDB entry 1MJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 8first strand
Strand 2
A
12 16anti-parallel
Strand 3
B
12 16anti-parallel
Strand 4
B
4 8anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 26first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
42 46anti-parallel
Strand 4
A
49 53anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 139first strand
Strand 2
A
99 104parallel
Strand 3
A
77 82parallel
Strand 4
A
152 158parallel
Strand 5
A
182 194parallel
Strand 6
A
230 237anti-parallel
Strand 7
A
215 221anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 26first strand
Strand 2
B
31 37anti-parallel
Strand 3
B
42 46anti-parallel
Strand 4
B
49 53anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
135 139first strand
Strand 2
B
99 104parallel
Strand 3
B
77 82parallel
Strand 4
B
152 158parallel
Strand 5
B
182 194parallel
Strand 6
B
230 237anti-parallel
Strand 7
B
215 221anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il