Analysis of interatomic Contacts of Structural Units in PDB entry:
1MK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MK2 entry

There are 2 chains in PDB entry 1MK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 219SER 415
B
SER 671GLY 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1MK2. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
279 287Right-handed alpha
Helix 2
2
A
316 322Right-handed alpha
Helix 3
3
A
323 325Right-handed 310
Helix 4
4
A
343 356Right-handed alpha
Helix 5
5
A
357 364Right-handed alpha
Helix 6
6
A
365 368Right-handed 310
Helix 7
7
A
387 391Right-handed 310
Helix 8
8
A
400 414Right-handed alpha
Helix 9
9
B
676 680Right-handed 310
Helix 10
10
B
685 692Right-handed alpha
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There are 3 sheets in PDB entry 1MK2. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
220 224first strand
Strand 2
B
702 706anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
241 249first strand
Strand 2
A
232 238anti-parallel
Strand 3
A
394 399anti-parallel
Strand 4
A
370 375anti-parallel
Strand 5
A
312 315anti-parallel
Strand 6
A
331 333anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
267 269first strand
Strand 2
A
253 257parallel
Strand 3
A
293 298anti-parallel
Strand 4
A
301 306anti-parallel
Strand 5
A
338 342anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il