Analysis of interatomic Contacts of Structural Units in PDB entry:
1MKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MKF entry

There are 2 chains in PDB entry 1MKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 12HIS 382
B
 HIS 12HIS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1MKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 37Right-handed alpha
Helix 2
2
A
44 58Right-handed alpha
Helix 3
3
A
60 66Right-handed 310
Helix 4
4
A
80 83Right-handed 310
Helix 5
5
A
140 142Right-handed 310
Helix 6
6
A
161 163Right-handed 310
Helix 7
7
A
220 225Right-handed 310
Helix 8
8
A
236 240Right-handed 310
Helix 9
9
A
262 269Right-handed alpha
Helix 10
10
A
287 290Right-handed 310
Helix 11
11
A
356 360Right-handed 310
Helix 12
12
B
28 36Right-handed alpha
Helix 13
13
B
44 55Right-handed alpha
Helix 14
14
B
60 66Right-handed 310
Helix 15
15
B
80 83Right-handed 310
Helix 16
16
B
140 142Right-handed 310
Helix 17
17
B
161 163Right-handed 310
Helix 18
18
B
226 230Right-handed 310
Helix 19
19
B
262 269Right-handed alpha
Helix 20
20
B
358 360Right-handed 310
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There are 8 sheets in PDB entry 1MKF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
68 75anti-parallel
Strand 3
A
192 201parallel
Strand 4
A
181 189anti-parallel
Strand 5
A
104 112anti-parallel
Strand 6
A
151 159anti-parallel
Strand 7
A
144 148anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
168 173anti-parallel
Strand 4
A
126 131anti-parallel
Strand 5
A
136 139anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
372 377parallel
Strand 3
A
362 369anti-parallel
Strand 4
A
294 301anti-parallel
Strand 5
A
315 325anti-parallel
Strand 6
A
328 331anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
279 285anti-parallel
Strand 4
A
349 354anti-parallel
Strand 5
A
339 343anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
68 75anti-parallel
Strand 3
B
192 201parallel
Strand 4
B
181 189anti-parallel
Strand 5
B
104 112anti-parallel
Strand 6
B
151 159anti-parallel
Strand 7
B
144 148anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
84 89anti-parallel
Strand 3
B
168 173anti-parallel
Strand 4
B
126 132anti-parallel
Strand 5
B
135 139anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 216first strand
Strand 2
B
372 377parallel
Strand 3
B
362 369anti-parallel
Strand 4
B
294 301anti-parallel
Strand 5
B
315 325anti-parallel
Strand 6
B
328 331anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
256 260anti-parallel
Strand 3
B
279 285anti-parallel
Strand 4
B
349 354anti-parallel
Strand 5
B
339 343anti-parallel
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