Analysis of interatomic Contacts of Structural Units in PDB entry:
1MQA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MQA entry

There is 1 chain in PDB entry 1MQA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 127THR 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1MQA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
143 161Right-handed alpha
Helix 2
2
A
182 190Right-handed alpha
Helix 3
3
A
191 196Right-handed alpha
Helix 4
4
A
207 219Right-handed alpha
Helix 5
5
A
221 225Right-handed 310
Helix 6
6
A
248 252Right-handed 310
Helix 7
7
A
270 275Right-handed 310
Helix 8
8
A
281 285Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1MQA.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
177 181first strand
Strand 2
A
166 173anti-parallel
Strand 3
A
130 137parallel
Strand 4
A
231 238parallel
Strand 5
A
255 260parallel
Strand 6
A
286 288parallel
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