Analysis of interatomic Contacts of Structural Units in PDB entry:
1N1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1N1M entry

There are 2 chains in PDB entry 1N1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 39	SER 764
B	SER 39	PRO 766

There are 35 helices in PDB entry 1N1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	50	Right-handed alpha
Helix 2	2	A	92	99	Right-handed 310
Helix 3	3	A	200	206	Right-handed alpha
Helix 4	4	A	290	295	Right-handed alpha
Helix 5	5	A	332	335	Right-handed 310
Helix 6	6	A	421	425	Right-handed 310
Helix 7	7	A	497	505	Right-handed alpha
Helix 8	8	A	562	570	Right-handed alpha
Helix 9	9	A	587	592	Right-handed alpha
Helix 10	10	A	593	595	Right-handed 310
Helix 11	11	A	600	615	Right-handed alpha
Helix 12	12	A	630	641	Right-handed alpha
Helix 13	13	A	658	662	Right-handed 310
Helix 14	14	A	663	672	Right-handed alpha
Helix 15	15	A	679	686	Right-handed alpha
Helix 16	16	A	688	698	Right-handed 310
Helix 17	17	A	712	727	Right-handed alpha
Helix 18	18	A	744	764	Right-handed alpha
Helix 19	19	B	44	51	Right-handed alpha
Helix 20	20	B	200	206	Right-handed alpha
Helix 21	21	B	290	295	Right-handed alpha
Helix 22	22	B	340	344	Right-handed 310
Helix 23	23	B	421	425	Right-handed 310
Helix 24	24	B	497	505	Right-handed alpha
Helix 25	25	B	562	570	Right-handed alpha
Helix 26	26	B	587	592	Right-handed alpha
Helix 27	27	B	593	595	Right-handed 310
Helix 28	28	B	600	616	Right-handed alpha
Helix 29	29	B	630	641	Right-handed alpha
Helix 30	30	B	658	662	Right-handed 310
Helix 31	31	B	663	672	Right-handed alpha
Helix 32	32	B	679	686	Right-handed alpha
Helix 33	33	B	688	698	Right-handed 310
Helix 34	34	B	713	726	Right-handed alpha
Helix 35	35	B	744	764	Right-handed alpha

There are 26 sheets in PDB entry 1N1M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	507	508	parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	67	71	anti-parallel
Strand 3	A	76	80	anti-parallel
Strand 4	A	86	90	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	113	122	anti-parallel
Strand 3	A	128	136	anti-parallel
Strand 4	A	141	142	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	171	175	anti-parallel
Strand 4	A	183	184	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	265	272	anti-parallel
Strand 3	A	222	229	anti-parallel
Strand 4	A	194	196	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	265	272	anti-parallel
Strand 3	A	222	229	anti-parallel
Strand 4	A	214	216	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	250	255	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	322	330	anti-parallel
Strand 4	A	337	338	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	322	330	anti-parallel
Strand 4	A	345	348	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	370	376	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	391	396	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	410	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	442	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	461	first strand
Strand 2	A	467	472	anti-parallel
Strand 3	A	479	484	anti-parallel
Strand 4	A	489	495	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	519	first strand
Strand 2	A	522	530	anti-parallel
Strand 3	A	574	578	anti-parallel
Strand 4	A	540	546	parallel
Strand 5	A	619	629	parallel
Strand 6	A	649	653	parallel
Strand 7	A	699	705	parallel
Strand 8	A	731	735	parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	507	508	parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	67	71	anti-parallel
Strand 3	B	76	80	anti-parallel
Strand 4	B	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	113	122	anti-parallel
Strand 3	B	128	136	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	164	168	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	183	184	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	265	272	anti-parallel
Strand 3	B	222	229	anti-parallel
Strand 4	B	194	196	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	265	272	anti-parallel
Strand 3	B	222	229	anti-parallel
Strand 4	B	214	216	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	250	255	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	307	first strand
Strand 2	B	310	317	anti-parallel
Strand 3	B	322	330	anti-parallel
Strand 4	B	337	338	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	307	first strand
Strand 2	B	310	317	anti-parallel
Strand 3	B	322	330	anti-parallel
Strand 4	B	345	348	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	370	376	anti-parallel
Strand 3	B	382	388	anti-parallel
Strand 4	B	391	396	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	410	first strand
Strand 2	B	414	419	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	442	444	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	461	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	479	484	anti-parallel
Strand 4	B	489	495	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	518	first strand
Strand 2	B	523	530	anti-parallel
Strand 3	B	574	578	anti-parallel
Strand 4	B	540	546	parallel
Strand 5	B	619	629	parallel
Strand 6	B	649	653	parallel
Strand 7	B	699	705	parallel
Strand 8	B	731	735	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1N1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
1N1M