Analysis of interatomic Contacts of Structural Units in PDB entry:
1N86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N86 entry

There are 10 chains in PDB entry 1N86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 119ASP 192
B
LEU 151PHE 457
C
GLU 97ARG 391
D
ILE 119ASP 192
E
LEU 151PHE 457
F
GLU 97ARG 391
G
GLY 1ARG 3
H
GLY 1ARG 3
I
GLY 1PRO 4
J
GLY 1PRO 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1N86. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
130 160Right-handed alpha
Helix 2
2
A
161 164Right-handed 310
Helix 3
3
A
175 186Right-handed alpha
Helix 4
4
B
152 158Right-handed 310
Helix 5
5
B
159 193Right-handed alpha
Helix 6
6
B
210 217Right-handed alpha
Helix 7
7
B
265 271Right-handed alpha
Helix 8
8
B
295 304Right-handed alpha
Helix 9
9
B
333 337Right-handed 310
Helix 10
10
B
351 356Right-handed alpha
Helix 11
11
B
361 367Right-handed alpha
Helix 12
12
B
423 427Right-handed 310
Helix 13
13
B
438 442Right-handed alpha
Helix 14
14
C
102 133Right-handed alpha
Helix 15
15
C
152 159Right-handed alpha
Helix 16
16
C
207 214Right-handed alpha
Helix 17
17
C
229 238Right-handed alpha
Helix 18
18
C
269 273Right-handed 310
Helix 19
19
C
299 305Right-handed alpha
Helix 20
20
C
325 331Right-handed alpha
Helix 21
21
C
355 359Right-handed 310
Helix 22
22
D
135 161Right-handed alpha
Helix 23
23
D
162 164Right-handed 310
Helix 24
24
D
174 187Right-handed alpha
Helix 25
25
E
165 179Right-handed alpha
Helix 26
26
E
179 193Right-handed alpha
Helix 27
27
E
210 217Right-handed alpha
Helix 28
28
E
265 271Right-handed alpha
Helix 29
29
E
295 304Right-handed alpha
Helix 30
30
E
333 337Right-handed 310
Helix 31
31
E
351 356Right-handed alpha
Helix 32
32
E
361 366Right-handed alpha
Helix 33
33
E
423 427Right-handed 310
Helix 34
34
E
438 442Right-handed alpha
Helix 35
35
F
106 134Right-handed alpha
Helix 36
36
F
152 159Right-handed alpha
Helix 37
37
F
207 214Right-handed alpha
Helix 38
38
F
229 238Right-handed alpha
Helix 39
39
F
269 273Right-handed 310
Helix 40
40
F
299 305Right-handed alpha
Helix 41
41
F
325 331Right-handed alpha
Helix 42
42
F
355 359Right-handed 310
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There are 13 sheets in PDB entry 1N86. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
198 199first strand
Strand 2
C
140 141parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
203 204first strand
Strand 2
C
215 218anti-parallel
Strand 3
C
226 227anti-parallel
Strand 4
C
190 197anti-parallel
Strand 5
C
178 184anti-parallel
Strand 6
C
165 169anti-parallel
Strand 7
C
149 150parallel
Strand 8
C
165 169parallel
Strand 9
C
178 184anti-parallel
Strand 10
C
190 197anti-parallel
Strand 11
C
381 388anti-parallel
Strand 12
C
244 251anti-parallel
Strand 13
C
257 267anti-parallel
Strand 14
C
276 277anti-parallel
Strand 15
C
257 267anti-parallel
Strand 16
C
280 283anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
321 322first strand
Strand 2
B
309 315anti-parallel
Strand 3
B
449 455anti-parallel
Strand 4
B
249 255anti-parallel
Strand 5
B
292 294anti-parallel
Strand 6
B
272 274anti-parallel
Strand 7
B
292 294anti-parallel
Strand 8
B
249 255anti-parallel
Strand 9
B
236 241anti-parallel
Strand 10
B
223 227anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
277 278first strand
Strand 2
B
288 289anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
324 331first strand
Strand 2
B
340 347anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
410 411first strand
Strand 2
B
436 437anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
313 314first strand
Strand 2
C
333 334anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
198 199first strand
Strand 2
F
140 141parallel
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There are 16 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
203 204first strand
Strand 2
F
215 218anti-parallel
Strand 3
F
226 227anti-parallel
Strand 4
F
190 197anti-parallel
Strand 5
F
178 184anti-parallel
Strand 6
F
165 169anti-parallel
Strand 7
F
149 150parallel
Strand 8
F
165 169parallel
Strand 9
F
178 184anti-parallel
Strand 10
F
190 197anti-parallel
Strand 11
F
381 388anti-parallel
Strand 12
F
244 251anti-parallel
Strand 13
F
257 267anti-parallel
Strand 14
F
276 277anti-parallel
Strand 15
F
257 267anti-parallel
Strand 16
F
280 283anti-parallel
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There are 11 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
340 347first strand
Strand 2
E
321 331anti-parallel
Strand 3
E
309 315anti-parallel
Strand 4
E
449 455anti-parallel
Strand 5
E
249 255anti-parallel
Strand 6
E
292 294anti-parallel
Strand 7
E
272 274anti-parallel
Strand 8
E
292 294anti-parallel
Strand 9
E
249 255anti-parallel
Strand 10
E
236 241anti-parallel
Strand 11
E
223 227anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
277 278first strand
Strand 2
E
288 289anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
410 411first strand
Strand 2
E
436 437anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
313 314first strand
Strand 2
F
333 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il