Analysis of interatomic Contacts of Structural Units in PDB entry:
1N8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N8Y entry

There is 1 chain in PDB entry 1N8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 1ASN 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1N8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
16 29Right-handed alpha
Helix 2
2
C
49 53Right-handed 310
Helix 3
3
C
85 88Right-handed 310
Helix 4
4
C
147 152Right-handed alpha
Helix 5
5
C
153 157Right-handed 310
Helix 6
6
C
210 214Right-handed 310
Helix 7
7
C
326 330Right-handed 310
Helix 8
8
C
339 344Right-handed 310
Helix 9
9
C
356 362Right-handed alpha
Helix 10
10
C
372 380Right-handed 310
Helix 11
11
C
401 405Right-handed 310
Helix 12
12
C
415 418Right-handed 310
Helix 13
13
C
460 465Right-handed alpha
Helix 14
14
C
479 484Right-handed alpha
Helix 15
15
C
494 498Right-handed 310
Helix 16
16
C
559 563Right-handed 310
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There are 13 sheets in PDB entry 1N8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
33 35parallel
Strand 3
C
57 58parallel
Strand 4
C
79 80parallel
Strand 5
C
126 127parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 41first strand
Strand 2
C
62 65parallel
Strand 3
C
90 95parallel
Strand 4
C
131 135parallel
Strand 5
C
161 163parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 239first strand
Strand 2
C
242 244anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
251 252first strand
Strand 2
C
261 262anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 270first strand
Strand 2
C
273 275anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 284first strand
Strand 2
C
290 291anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 302first strand
Strand 2
C
308 312anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
321 322first strand
Strand 2
C
348 350parallel
Strand 3
C
384 385parallel
Strand 4
C
409 410parallel
Strand 5
C
439 440parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
353 355first strand
Strand 2
C
389 391parallel
Strand 3
C
420 425parallel
Strand 4
C
444 448parallel
Strand 5
C
472 475parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
513 515first strand
Strand 2
C
518 520anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
532 533first strand
Strand 2
C
540 541anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
569 571first strand
Strand 2
C
574 576anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
581 583first strand
Strand 2
C
592 596anti-parallel
Strand 3
C
602 604anti-parallel
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