Analysis of interatomic Contacts of Structural Units in PDB entry:
1NJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NJI entry

There are 30 chains in PDB entry 1NJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
U 10 A 2914
B
U 3001 C 3122
C
GLY 1GLY 237
D
PRO 1GLY 337
E
MET 1ARG 246
F
PHE 10VAL 174
G
PRO 1PRO 172
H
PRO 1ARG 119
I
ILE 12ASP 73
J
LYS 1ALA 167
K
ALA 4TRP 145
L
MET 1VAL 132
M
THR 1GLN 150
N
ALA 1ALA 194
O
ALA 1LEU 186
P
SER 1ARG 115
Q
THR 1ALA 143
R
PRO 1GLU 95
S
GLY 1PRO 150
T
SER 1ILE 81
U
SER 1ALA 119
V
ARG 4ARG 56
W
THR 1ASP 65
X
MET 1ARG 154
Y
GLU 7GLU 88
Z
THR 95VAL 236
1
ARG 10ALA 82
2
THR 1GLU 56
3
GLY 1GLU 49
4
MET 1GLU 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are142 helices in PDB entry 1NJI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
C
4 11Right-handed alpha
Helix 2
2
C
12 12Right-handed 310
Helix 3
3
C
13 17Right-handed 310
Helix 4
4
C
19 23Right-handed 310
Helix 5
5
C
163 167Right-handed 310
Helix 6
6
C
171 180Right-handed alpha
Helix 7
7
C
190 194Right-handed 310
Helix 8
8
C
195 199Right-handed 310
Helix 9
9
D
108 112Right-handed 310
Helix 10
10
D
120 135Right-handed alpha
Helix 11
11
D
147 151Right-handed 310
Helix 12
12
D
170 185Right-handed alpha
Helix 13
13
D
189 194Right-handed alpha
Helix 14
14
D
213 219Right-handed alpha
Helix 15
15
D
224 230Right-handed 310
Helix 16
16
E
19 24Right-handed 310
Helix 17
17
E
27 41Right-handed alpha
Helix 18
18
E
103 118Right-handed alpha
Helix 19
19
E
120 127Right-handed alpha
Helix 20
20
E
142 147Right-handed 310
Helix 21
21
E
149 160Right-handed alpha
Helix 22
22
E
162 170Right-handed alpha
Helix 23
23
E
177 183Right-handed 310
Helix 24
24
E
201 206Right-handed alpha
Helix 25
25
E
219 224Right-handed alpha
Helix 26
26
E
225 228Right-handed 310
Helix 27
27
E
237 244Right-handed alpha
Helix 28
28
F
37 46Right-handed alpha
Helix 29
29
F
77 88Right-handed alpha
Helix 30
30
F
89 91Right-handed 310
Helix 31
31
F
138 143Right-handed 310
Helix 32
32
F
152 156Right-handed 310
Helix 33
33
F
158 168Right-handed alpha
Helix 34
34
G
55 77Right-handed alpha
Helix 35
35
G
106 110Right-handed 310
Helix 36
36
G
137 151Right-handed alpha
Helix 37
37
H
9 27Right-handed alpha
Helix 38
38
H
32 43Right-handed alpha
Helix 39
39
H
57 62Right-handed alpha
Helix 40
40
H
62 69Right-handed alpha
Helix 41
41
H
79 87Right-handed alpha
Helix 42
42
H
104 118Right-handed alpha
Helix 43
43
I
13 29Right-handed alpha
Helix 44
44
I
63 72Right-handed alpha
Helix 45
45
J
2 6Right-handed 310
Helix 46
46
J
58 70Right-handed alpha
Helix 47
47
J
141 150Right-handed alpha
Helix 48
48
K
18 31Right-handed alpha
Helix 49
49
K
40 43Right-handed 310
Helix 50
50
K
49 63Right-handed alpha
Helix 51
51
K
74 85Right-handed alpha
Helix 52
52
K
91 100Right-handed alpha
Helix 53
53
K
122 126Right-handed 310
Helix 54
54
K
132 139Right-handed alpha
Helix 55
55
L
116 118Right-handed 310
Helix 56
56
L
121 126Right-handed alpha
Helix 57
57
M
2 7Right-handed alpha
Helix 58
58
M
23 28Right-handed 310
Helix 59
59
M
54 58Right-handed 310
Helix 60
60
M
66 72Right-handed alpha
Helix 61
61
M
93 97Right-handed alpha
Helix 62
62
M
126 136Right-handed alpha
Helix 63
63
N
3 14Right-handed alpha
Helix 64
64
N
17 32Right-handed alpha
Helix 65
65
N
45 53Right-handed alpha
Helix 66
66
N
82 86Right-handed 310
Helix 67
67
N
96 109Right-handed alpha
Helix 68
68
N
147 156Right-handed 310
Helix 69
69
N
157 162Right-handed 310
Helix 70
70
N
164 171Right-handed alpha
Helix 71
71
N
187 191Right-handed 310
Helix 72
72
O
10 15Right-handed alpha
Helix 73
73
O
19 29Right-handed alpha
Helix 74
74
O
64 70Right-handed 310
Helix 75
75
O
77 95Right-handed alpha
Helix 76
76
O
113 125Right-handed alpha
Helix 77
77
O
132 136Right-handed 310
Helix 78
78
O
139 144Right-handed alpha
Helix 79
79
O
144 153Right-handed alpha
Helix 80
80
O
168 180Right-handed alpha
Helix 81
81
P
4 21Right-handed alpha
Helix 82
82
P
24 35Right-handed alpha
Helix 83
83
P
36 40Right-handed 310
Helix 84
84
P
45 52Right-handed alpha
Helix 85
85
P
82 93Right-handed alpha
Helix 86
86
P
98 105Right-handed alpha
Helix 87
87
Q
3 14Right-handed alpha
Helix 88
88
Q
17 19Right-handed 310
Helix 89
89
Q
27 33Right-handed alpha
Helix 90
90
Q
36 46Right-handed alpha
Helix 91
91
Q
59 71Right-handed alpha
Helix 92
92
Q
76 80Right-handed 310
Helix 93
93
Q
83 88Right-handed alpha
Helix 94
94
Q
89 111Right-handed alpha
Helix 95
95
Q
115 128Right-handed alpha
Helix 96
96
Q
133 142Right-handed alpha
Helix 97
97
R
25 30Right-handed 310
Helix 98
98
R
53 57Right-handed 310
Helix 99
99
R
87 89Right-handed 310
Helix 100
100
S
9 11Right-handed 310
Helix 101
101
S
24 36Right-handed alpha
Helix 102
102
S
39 52Right-handed alpha
Helix 103
103
S
81 101Right-handed alpha
Helix 104
104
S
129 131Right-handed 310
Helix 105
105
T
11 22Right-handed alpha
Helix 106
106
T
33 46Right-handed alpha
Helix 107
107
T
73 80Right-handed alpha
Helix 108
108
U
3 13Right-handed alpha
Helix 109
109
U
15 22Right-handed 310
Helix 110
110
U
28 36Right-handed alpha
Helix 111
111
U
92 94Right-handed 310
Helix 112
112
U
105 114Right-handed alpha
Helix 113
113
V
33 42Right-handed alpha
Helix 114
114
V
45 49Right-handed 310
Helix 115
115
W
4 10Right-handed alpha
Helix 116
116
W
12 36Right-handed alpha
Helix 117
117
W
43 64Right-handed alpha
Helix 118
118
X
14 24Right-handed alpha
Helix 119
119
X
38 49Right-handed alpha
Helix 120
120
X
58 70Right-handed alpha
Helix 121
121
X
80 88Right-handed alpha
Helix 122
122
X
92 102Right-handed alpha
Helix 123
123
X
131 135Right-handed 310
Helix 124
124
X
142 153Right-handed alpha
Helix 125
125
Y
15 20Right-handed 310
Helix 126
126
Y
21 23Right-handed 310
Helix 127
127
Y
24 41Right-handed alpha
Helix 128
128
Y
44 46Right-handed 310
Helix 129
129
Y
51 60Right-handed alpha
Helix 130
130
Z
110 124Right-handed alpha
Helix 131
131
Z
165 169Right-handed 310
Helix 132
132
Z
190 194Right-handed 310
Helix 133
133
Z
210 224Right-handed alpha
Helix 134
134
1
10 15Right-handed 310
Helix 135
135
1
19 35Right-handed alpha
Helix 136
136
1
73 82Right-handed alpha
Helix 137
137
2
4 9Right-handed alpha
Helix 138
138
2
48 52Right-handed 310
Helix 139
139
3
4 18Right-handed alpha
Helix 140
140
3
22 29Right-handed alpha
Helix 141
141
4
34 44Right-handed alpha
Helix 142
142
4
49 54Right-handed 310
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There are 37 sheets in PDB entry 1NJI. Click on sheet of interest to get list of strands forming it: 3, 5, 13, 14, 29, 30, 40, 44, 45, 56, 51, 57, 61, 63, 69, 71, 74, 83, 86, 87, 92, 98, 100, 110, 112, 116, 119, 124, 128, 136, 138, 142, 143, 146, 149, 152, 153,

There are 3 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 60first strand
Strand 2
C
39 47anti-parallel
Strand 3
C
79 81anti-parallel
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There are 5 strands in 5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
153 156first strand
Strand 2
C
104 106anti-parallel
Strand 3
C
126 130anti-parallel
Strand 4
C
136 139anti-parallel
Strand 5
C
145 148anti-parallel
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There are 6 strands in 13 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
161 167first strand
Strand 2
D
137 145anti-parallel
Strand 3
D
79 90anti-parallel
Strand 4
D
93 101anti-parallel
Strand 5
D
79 90anti-parallel
Strand 6
D
187 188anti-parallel
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There are 7 strands in 14 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
327 330first strand
Strand 2
D
41 53anti-parallel
Strand 3
D
68 75anti-parallel
Strand 4
D
292 298anti-parallel
Strand 5
D
261 275anti-parallel
Strand 6
D
199 205anti-parallel
Strand 7
D
308 313anti-parallel
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There are 5 strands in 29 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 6first strand
Strand 2
E
138 140parallel
Strand 3
E
233 236parallel
Strand 4
E
193 196parallel
Strand 5
E
211 214parallel
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There are 2 strands in 30 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
71 73first strand
Strand 2
E
76 77anti-parallel
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There are 4 strands in 40 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
71 75first strand
Strand 2
F
17 25anti-parallel
Strand 3
F
129 135anti-parallel
Strand 4
F
104 106anti-parallel
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There are 2 strands in 44 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
46 51first strand
Strand 2
G
38 43anti-parallel
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There are 2 strands in 45 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
19 24first strand
Strand 2
G
27 32anti-parallel
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There are 3 strands in 56 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
80 87first strand
Strand 2
G
130 135anti-parallel
Strand 3
G
123 127anti-parallel
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There are 2 strands in 51 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
101 105first strand
Strand 2
G
114 117anti-parallel
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There are 3 strands in 57 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
95 98first strand
Strand 2
H
48 51anti-parallel
Strand 3
H
74 77parallel
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There are 4 strands in 61 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
82 85first strand
Strand 2
J
130 136anti-parallel
Strand 3
J
44 50anti-parallel
Strand 4
J
157 161anti-parallel
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There are 2 strands in 63 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
117 125first strand
Strand 2
J
91 95anti-parallel
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There are 2 strands in 69 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
36 39first strand
Strand 2
K
101 103parallel
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There are 1 strands in 71 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
129 131first strand
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There are 4 strands in 74 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
80 81first strand
Strand 2
L
87 90anti-parallel
Strand 3
V
19 22parallel
Strand 4
V
28 31anti-parallel
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There are 5 strands in 83 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
17 20first strand
Strand 2
L
26 34anti-parallel
Strand 3
L
52 60anti-parallel
Strand 4
L
68 75anti-parallel
Strand 5
L
94 98anti-parallel
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There are 2 strands in 86 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
105 109first strand
Strand 2
M
124 125parallel
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There are 2 strands in 87 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
119 122first strand
Strand 2
M
139 142parallel
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There are 3 strands in 92 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
60 68first strand
Strand 2
N
126 134anti-parallel
Strand 3
N
113 122anti-parallel
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There are 3 strands in 98 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
43 49first strand
Strand 2
O
33 38anti-parallel
Strand 3
O
101 103parallel
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There are 5 strands in 100 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
57 65first strand
Strand 2
P
111 113parallel
Strand 3
P
57 65parallel
Strand 4
P
75 81parallel
Strand 5
P
94 97parallel
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There are 4 strands in 110 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
70 77first strand
Strand 2
R
60 67anti-parallel
Strand 3
R
38 41anti-parallel
Strand 4
R
91 93anti-parallel
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There are 2 strands in 112 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
138 148first strand
Strand 2
S
110 122anti-parallel
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There are 1 strands in 116 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
132 135first strand
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There are 3 strands in 119 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
23 28first strand
Strand 2
T
62 68anti-parallel
Strand 3
T
49 56anti-parallel
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There are 5 strands in 124 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
24 27first strand
Strand 2
U
96 100parallel
Strand 3
U
47 50anti-parallel
Strand 4
U
59 66anti-parallel
Strand 5
U
71 74anti-parallel
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There are 1 strands in 128 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
86 88first strand
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There are 4 strands in 136 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
31 35first strand
Strand 2
X
2 6anti-parallel
Strand 3
X
52 55anti-parallel
Strand 4
X
139 140parallel
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There are 3 strands in 138 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
69 77first strand
Strand 2
Y
82 86anti-parallel
Strand 3
Y
48 50parallel
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There are 1 strands in 142 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
233 236first strand
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There are 1 strands in 143 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
201 205first strand
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There are 2 strands in 146 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
54 57first strand
Strand 2
1
63 65anti-parallel
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There are 2 strands in 149 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
25 28first strand
Strand 2
2
33 34anti-parallel
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There are 1 strands in 152 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
4
89 91first strand
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There are 3 strands in 153 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
4
18 24first strand
Strand 2
4
67 71anti-parallel
Strand 3
4
77 78anti-parallel
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