Analysis of interatomic Contacts of Structural Units in PDB entry:
1NM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NM8 entry

There is 1 chain in PDB entry 1NM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 9SER 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1NM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
38 54Right-handed alpha
Helix 3
3
A
57 73Right-handed alpha
Helix 4
4
A
77 86Right-handed alpha
Helix 5
5
A
110 134Right-handed alpha
Helix 6
6
A
149 155Right-handed 310
Helix 7
7
A
204 218Right-handed alpha
Helix 8
8
A
226 233Right-handed 310
Helix 9
9
A
234 246Right-handed alpha
Helix 10
10
A
248 261Right-handed alpha
Helix 11
11
A
278 290Right-handed alpha
Helix 12
12
A
326 343Right-handed alpha
Helix 13
13
A
365 385Right-handed alpha
Helix 14
14
A
398 404Right-handed alpha
Helix 15
15
A
407 425Right-handed alpha
Helix 16
16
A
451 462Right-handed alpha
Helix 17
17
A
467 491Right-handed alpha
Helix 18
18
A
495 509Right-handed alpha
Helix 19
19
A
514 519Right-handed alpha
Helix 20
20
A
519 526Right-handed alpha
Helix 21
21
A
578 599Right-handed alpha
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There are 4 sheets in PDB entry 1NM8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
181 186anti-parallel
Strand 4
A
264 268parallel
Strand 5
A
306 311parallel
Strand 6
A
316 320anti-parallel
Strand 7
A
100 102anti-parallel
Strand 8
A
542 544anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
145 146anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
168 171anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 393first strand
Strand 2
A
564 571anti-parallel
Strand 3
A
553 559anti-parallel
Strand 4
A
530 534parallel
Strand 5
A
430 435parallel
Strand 6
A
444 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il