Analysis of interatomic Contacts of Structural Units in PDB entry:
1NVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NVG entry

There is 1 chain in PDB entry 1NVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1NVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 46Right-handed alpha
Helix 2
2
A
101 106Right-handed alpha
Helix 3
3
A
108 112Right-handed 310
Helix 4
4
A
134 136Right-handed 310
Helix 5
5
A
145 150Right-handed alpha
Helix 6
6
A
151 153Right-handed 310
Helix 7
7
A
154 166Right-handed alpha
Helix 8
8
A
181 195Right-handed alpha
Helix 9
9
A
205 215Right-handed alpha
Helix 10
10
A
227 236Right-handed alpha
Helix 11
11
A
250 257Right-handed alpha
Helix 12
12
A
280 288Right-handed alpha
Helix 13
13
A
298 311Right-handed alpha
Helix 14
14
A
326 336Right-handed alpha
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There are 5 sheets in PDB entry 1NVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
64 65anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
89 92anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
28 37anti-parallel
Strand 5
A
129 132anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
89 92anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
28 37anti-parallel
Strand 5
A
342 346anti-parallel
Strand 6
A
319 323parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
116 117anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
198 203parallel
Strand 3
A
173 177parallel
Strand 4
A
241 247parallel
Strand 5
A
261 270parallel
Strand 6
A
290 294parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il