Analysis of interatomic Contacts of Structural Units in PDB entry:
1NVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NVP entry

There are 6 chains in PDB entry 1NVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 G 1 G 17
F
 C 1 C 17
A
 SER 159THR 338
B
 THR 9MET 51
C
 ASP 330TRP 376
D
 TYR 3ASP 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1NVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
179 187Right-handed alpha
Helix 2
2
A
226 244Right-handed alpha
Helix 3
3
A
269 277Right-handed alpha
Helix 4
4
A
317 334Right-handed alpha
Helix 5
5
B
9 33Right-handed alpha
Helix 6
6
B
35 51Right-handed alpha
Helix 7
7
D
3 8Right-handed 310
Helix 8
8
D
9 25Right-handed alpha
Helix 9
9
D
29 51Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1NVP.

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
291 295anti-parallel
Strand 3
A
300 304anti-parallel
Strand 4
A
309 315anti-parallel
Strand 5
A
251 263anti-parallel
Strand 6
A
164 173anti-parallel
Strand 7
A
218 222anti-parallel
Strand 8
A
209 213anti-parallel
Strand 9
A
197 204anti-parallel
Strand 10
A
190 193anti-parallel
Strand 11
D
55 68parallel
Strand 12
C
363 375parallel
Strand 13
C
348 360anti-parallel
Strand 14
C
334 345anti-parallel
Strand 15
D
87 98parallel
Strand 16
D
71 82anti-parallel
Strand 17
D
55 68anti-parallel
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