Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1O4C entry
There are 2 chains in PDB entry 1O4C
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
SER 1 | TYR 43 |
A
|
LEU 45 | PRO 105 |
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There are 3
helices in PDB entry 1O4C. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 1 |
5 | Right-handed 310 |
Helix 2 |
2 | A
| 13 |
22 | Right-handed alpha |
Helix 3 |
3 | A
| 81 |
90 | Right-handed alpha |
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There is
1 sheet ( A) in PDB entry 1O4C.
There are 5
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 31 |
35 | first strand |
Strand 2 |
A
| 43 |
51 | anti-parallel |
Strand 3 |
A
| 55 |
65 | anti-parallel |
Strand 4 |
A
| 71 |
72 | anti-parallel |
Strand 5 |
A
| 78 |
79 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il