Analysis of interatomic Contacts of Structural Units in PDB entry:
1O7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O7D entry

There are 5 chains in PDB entry 1O7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 51GLN 342
B
 ILE 347ALA 422
C
 GLY 431ASN 585
D
 ARG 603GLY 875
E
 PRO 885GLU 1007
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1O7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 87Right-handed alpha
Helix 2
2
A
96 111Right-handed alpha
Helix 3
3
A
120 130Right-handed alpha
Helix 4
4
A
132 145Right-handed alpha
Helix 5
5
A
164 184Right-handed alpha
Helix 6
6
A
185 188Right-handed 310
Helix 7
7
A
201 211Right-handed alpha
Helix 8
8
A
222 232Right-handed alpha
Helix 9
9
A
288 305Right-handed alpha
Helix 10
10
A
324 341Right-handed alpha
Helix 11
11
B
355 366Right-handed alpha
Helix 12
12
B
389 393Right-handed 310
Helix 13
13
B
395 419Right-handed alpha
Helix 14
14
C
433 443Right-handed alpha
Helix 15
15
C
454 485Right-handed alpha
Helix 16
16
C
495 499Right-handed 310
Helix 17
17
C
501 507Right-handed alpha
Helix 18
18
D
771 775Right-handed 310
Helix 19
19
D
832 837Right-handed 310
Helix 20
20
D
849 865Right-handed alpha
Helix 21
21
E
962 965Right-handed 310
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There are 12 sheets in PDB entry 1O7D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC, A, DB, C, DD, EA, EB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 316first strand
Strand 2
A
63 69parallel
Strand 3
B
349 353parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
148 150parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
215 218parallel
Strand 3
A
251 256parallel
Strand 4
A
236 240anti-parallel
Strand 5
B
372 373parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
490 491first strand
Strand 2
D
868 873anti-parallel
Strand 3
C
509 516anti-parallel
Strand 4
C
574 582anti-parallel
Strand 5
C
535 538anti-parallel
Strand 6
C
544 545anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
490 491first strand
Strand 2
D
868 873anti-parallel
Strand 3
C
509 516anti-parallel
Strand 4
C
574 582anti-parallel
Strand 5
E
888 889anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
522 530first strand
Strand 2
C
558 570anti-parallel
Strand 3
C
548 551anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
606 608first strand
Strand 2
D
612 616anti-parallel
Strand 3
D
623 628anti-parallel
Strand 4
D
634 636anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
670 671first strand
Strand 2
D
638 645anti-parallel
Strand 3
D
727 734anti-parallel
Strand 4
D
808 816anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
677 682first strand
Strand 2
D
687 694anti-parallel
Strand 3
D
697 703anti-parallel
Strand 4
D
710 716anti-parallel
Strand 5
D
838 848anti-parallel
Strand 6
D
789 795anti-parallel
Strand 7
D
781 785anti-parallel
Strand 8
D
742 746anti-parallel
Strand 9
D
752 756anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
776 778first strand
Strand 2
D
799 801anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
901 909first strand
Strand 2
E
912 918anti-parallel
Strand 3
E
997 1005anti-parallel
Strand 4
E
947 954anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
935 938first strand
Strand 2
E
989 992anti-parallel
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