Analysis of interatomic Contacts of Structural Units in PDB entry:
1O86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O86 entry

There is 1 chain in PDB entry 1O86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 40GLN 618
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1O86. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
40 71Right-handed alpha
Helix 2
2
A
74 100Right-handed alpha
Helix 3
3
A
101 107Right-handed 310
Helix 4
4
A
109 120Right-handed alpha
Helix 5
5
A
122 127Right-handed 310
Helix 6
6
A
128 149Right-handed alpha
Helix 7
7
A
163 172Right-handed alpha
Helix 8
8
A
174 211Right-handed alpha
Helix 9
9
A
215 222Right-handed alpha
Helix 10
12
A
223 225Right-handed 310
Helix 11
13
A
228 260Right-handed alpha
Helix 12
15
A
283 285Right-handed 310
Helix 13
16
A
286 291Right-handed alpha
Helix 14
17
A
300 308Right-handed alpha
Helix 15
18
A
311 326Right-handed alpha
Helix 16
19
A
332 339Right-handed alpha
Helix 17
20
A
374 394Right-handed alpha
Helix 18
21
A
398 402Right-handed 310
Helix 19
22
A
406 430Right-handed alpha
Helix 20
24
A
439 473Right-handed alpha
Helix 21
25
A
480 494Right-handed alpha
Helix 22
26
A
506 511Right-handed 310
Helix 23
27
A
520 541Right-handed alpha
Helix 24
28
A
546 550Right-handed 310
Helix 25
29
A
555 568Right-handed alpha
Helix 26
30
A
573 583Right-handed alpha
Helix 27
31
A
589 610Right-handed alpha
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There are 3 sheets in PDB entry 1O86. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 153first strand
Strand 2
A
157 161anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
270 272first strand
Strand 2
A
495 496parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
355 359first strand
Strand 2
A
364 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il