Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJV entry

There are 2 chains in PDB entry 1OJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1CYS 254
B
GLN 2CYS 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 1OJV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
80 84Right-handed 310
Helix 2
2
B
80 84Right-handed 310
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There are 16 sheets in PDB entry 1OJV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 4first strand
Strand 2
A
23 24anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
13 15first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
46 50anti-parallel
Strand 4
A
54 55anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
38 39first strand
Strand 2
A
62 63anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
75 77first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
110 112anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
101 103first strand
Strand 2
A
126 128anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
140 143first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
169 175anti-parallel
Strand 4
A
178 181anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 165first strand
Strand 2
A
187 190anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
202 204first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
232 238anti-parallel
Strand 4
A
241 244anti-parallel
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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
250 252first strand
Strand 2
A
226 230anti-parallel
Strand 3
B
140 144anti-parallel
Strand 4
B
153 158anti-parallel
Strand 5
B
169 174anti-parallel
Strand 6
B
179 181anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
13 15first strand
Strand 2
B
28 33anti-parallel
Strand 3
B
46 50anti-parallel
Strand 4
B
54 55anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
37 39first strand
Strand 2
B
62 64anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
75 77first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
110 112anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 103first strand
Strand 2
B
126 128anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 165first strand
Strand 2
B
187 190anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
202 204first strand
Strand 2
B
216 221anti-parallel
Strand 3
B
232 238anti-parallel
Strand 4
B
241 244anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
225 228first strand
Strand 2
B
250 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il