Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OYA entry

There is 1 chain in PDB entry 1OYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1OYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 17Right-handed 310
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
91 106Right-handed alpha
Helix 4
4
A
119 121Right-handed 310
Helix 5
5
A
124 129Right-handed alpha
Helix 6
6
A
145 153Right-handed alpha
Helix 7
7
A
163 182Right-handed alpha
Helix 8
8
A
197 202Right-handed alpha
Helix 9
9
A
217 220Right-handed alpha
Helix 10
10
A
222 235Right-handed alpha
Helix 11
11
A
237 239Right-handed 310
Helix 12
12
A
255 257Right-handed 310
Helix 13
13
A
261 277Right-handed alpha
Helix 14
14
A
309 315Right-handed 310
Helix 15
15
A
330 338Right-handed alpha
Helix 16
16
A
348 352Right-handed alpha
Helix 17
17
A
356 362Right-handed alpha
Helix 18
18
A
371 373Right-handed 310
Helix 19
19
A
388 393Right-handed alpha
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There are 4 sheets in PDB entry 1OYA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
25 27anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
110 115parallel
Strand 3
A
187 191parallel
Strand 4
A
240 244parallel
Strand 5
A
284 288parallel
Strand 6
A
320 323parallel
Strand 7
A
342 345parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
114 116parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
158 160parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il