Analysis of interatomic Contacts of Structural Units in PDB entry:
1P57


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P57 entry

There are 2 chains in PDB entry 1P57 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 5PRO 114
B
ILE 16GLN 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1P57. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
36 48Right-handed alpha
Helix 2
2
A
61 65Right-handed alpha
Helix 3
3
A
79 83Right-handed 310
Helix 4
4
A
85 88Right-handed 310
Helix 5
5
B
55 59Right-handed 310
Helix 6
6
B
60 64Right-handed 310
Helix 7
7
B
65 65Right-handed 310
Helix 8
8
B
164 169Right-handed alpha
Helix 9
9
B
234 246Right-handed alpha
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There are 4 sheets in PDB entry 1P57. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 11first strand
Strand 2
A
18 22anti-parallel
Strand 3
A
27 31anti-parallel
Strand 4
A
72 75parallel
Strand 5
A
90 93anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 105first strand
Strand 2
A
53 60anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 163anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
198 203anti-parallel
Strand 5
B
208 215anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
180 183anti-parallel
Strand 8
B
156 163anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
81 83first strand
Strand 2
B
65 68anti-parallel
Strand 3
B
30 35anti-parallel
Strand 4
B
39 46anti-parallel
Strand 5
B
51 54anti-parallel
Strand 6
B
104 108anti-parallel
Strand 7
B
85 90anti-parallel
Strand 8
B
250 253parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il