Analysis of interatomic Contacts of Structural Units in PDB entry:
1P84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1P84 entry

There are 11 chains in PDB entry 1P84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	TRP 457
B	LEU 17	LEU 368
C	MET 1	LYS 385
D	MET 62	PRO 307
E	LYS 31	GLY 215
F	VAL 74	LYS 147
G	GLN 3	LYS 127
H	GLY 2	VAL 94
I	SER 4	ALA 58
J	GLU 1	PRO 127
K	ASP 1	LYS 107

There are 92 helices in PDB entry 1P84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	58	62	Right-handed 310
Helix 2	2	A	68	78	Right-handed alpha
Helix 3	3	A	79	89	Right-handed alpha
Helix 4	4	A	114	125	Right-handed alpha
Helix 5	5	A	135	155	Right-handed alpha
Helix 6	6	A	155	169	Right-handed alpha
Helix 7	7	A	172	176	Right-handed 310
Helix 8	8	A	181	186	Right-handed alpha
Helix 9	9	A	189	201	Right-handed alpha
Helix 10	10	A	215	226	Right-handed alpha
Helix 11	11	A	274	286	Right-handed alpha
Helix 12	12	A	292	297	Right-handed alpha
Helix 13	13	A	301	307	Right-handed alpha
Helix 14	14	A	339	357	Right-handed alpha
Helix 15	15	A	359	379	Right-handed alpha
Helix 16	16	A	382	398	Right-handed alpha
Helix 17	17	A	402	412	Right-handed alpha
Helix 18	18	A	414	426	Right-handed alpha
Helix 19	19	A	444	451	Right-handed alpha
Helix 20	20	B	38	42	Right-handed 310
Helix 21	21	B	46	55	Right-handed alpha
Helix 22	22	B	63	75	Right-handed alpha
Helix 23	23	B	97	112	Right-handed alpha
Helix 24	24	B	115	122	Right-handed alpha
Helix 25	25	B	122	135	Right-handed alpha
Helix 26	26	B	137	151	Right-handed alpha
Helix 27	27	B	168	180	Right-handed alpha
Helix 28	28	B	193	204	Right-handed alpha
Helix 29	29	B	205	209	Right-handed 310
Helix 30	30	B	249	261	Right-handed alpha
Helix 31	31	B	265	271	Right-handed 310
Helix 32	32	B	293	310	Right-handed alpha
Helix 33	33	B	315	318	Right-handed 310
Helix 34	34	B	319	324	Right-handed alpha
Helix 35	35	B	358	362	Right-handed 310
Helix 36	36	C	2	7	Right-handed alpha
Helix 37	37	C	7	18	Right-handed alpha
Helix 38	38	C	27	30	Right-handed 310
Helix 39	39	C	31	52	Right-handed alpha
Helix 40	40	C	60	71	Right-handed alpha
Helix 41	41	C	74	103	Right-handed alpha
Helix 42	42	C	110	135	Right-handed alpha
Helix 43	43	C	137	150	Right-handed alpha
Helix 44	44	C	151	154	Right-handed 310
Helix 45	45	C	157	167	Right-handed alpha
Helix 46	46	C	172	205	Right-handed alpha
Helix 47	47	C	223	247	Right-handed alpha
Helix 48	48	C	253	258	Right-handed 310
Helix 49	49	C	275	284	Right-handed alpha
Helix 50	50	C	287	301	Right-handed alpha
Helix 51	51	C	304	309	Right-handed alpha
Helix 52	52	C	319	341	Right-handed alpha
Helix 53	53	C	345	365	Right-handed alpha
Helix 54	54	C	365	381	Right-handed alpha
Helix 55	55	D	63	68	Right-handed alpha
Helix 56	56	D	86	100	Right-handed alpha
Helix 57	57	D	101	104	Right-handed 310
Helix 58	58	D	111	116	Right-handed 310
Helix 59	59	D	121	131	Right-handed alpha
Helix 60	60	D	161	168	Right-handed alpha
Helix 61	61	D	186	196	Right-handed alpha
Helix 62	62	D	243	260	Right-handed alpha
Helix 63	63	D	262	297	Right-handed alpha
Helix 64	64	E	51	80	Right-handed alpha
Helix 65	65	E	81	83	Right-handed 310
Helix 66	66	E	85	89	Right-handed 310
Helix 67	67	E	99	101	Right-handed 310
Helix 68	68	E	122	131	Right-handed alpha
Helix 69	69	E	132	132	Right-handed 310
Helix 70	70	E	133	137	Right-handed 310
Helix 71	71	E	142	147	Right-handed alpha
Helix 72	72	F	76	87	Right-handed alpha
Helix 73	73	F	88	111	Right-handed alpha
Helix 74	74	F	123	139	Right-handed alpha
Helix 75	75	F	141	146	Right-handed alpha
Helix 76	76	G	4	18	Right-handed alpha
Helix 77	77	G	18	23	Right-handed alpha
Helix 78	78	G	25	37	Right-handed alpha
Helix 79	79	G	38	42	Right-handed 310
Helix 80	80	G	44	49	Right-handed 310
Helix 81	81	G	53	63	Right-handed alpha
Helix 82	82	G	64	84	Right-handed alpha
Helix 83	83	G	89	93	Right-handed 310
Helix 84	84	G	103	122	Right-handed alpha
Helix 85	85	H	31	34	Right-handed 310
Helix 86	86	H	49	53	Right-handed 310
Helix 87	87	H	55	81	Right-handed alpha
Helix 88	88	H	85	93	Right-handed alpha
Helix 89	89	I	4	11	Right-handed alpha
Helix 90	90	I	17	44	Right-handed alpha
Helix 91	91	I	48	55	Right-handed alpha
Helix 92	92	J	87	91	Right-handed 310

There are 17 sheets in PDB entry 1P84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	206	211	parallel
Strand 4	A	49	55	anti-parallel
Strand 5	A	102	108	anti-parallel
Strand 6	A	92	97	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	A	314	321	anti-parallel
Strand 3	A	326	334	anti-parallel
Strand 4	A	259	266	anti-parallel
Strand 5	A	432	437	anti-parallel
Strand 6	A	247	252	parallel
Strand 7	H	24	29	anti-parallel
Strand 8	D	299	302	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	185	190	parallel
Strand 3	B	28	35	anti-parallel
Strand 4	B	87	94	anti-parallel
Strand 5	B	76	82	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	232	first strand
Strand 2	B	352	357	parallel
Strand 3	B	237	245	anti-parallel
Strand 4	B	283	291	anti-parallel
Strand 5	B	273	278	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	218	220	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	146	148	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	222	223	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	211	214	anti-parallel
Strand 3	E	205	208	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	111	first strand
Strand 2	E	114	120	anti-parallel
Strand 3	E	152	156	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	170	first strand
Strand 2	E	175	178	anti-parallel
Strand 3	E	183	185	anti-parallel
Strand 4	E	191	193	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	8	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	71	73	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	116	120	parallel
Strand 3	J	92	102	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	46	53	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	116	120	parallel
Strand 3	J	92	102	anti-parallel
Strand 4	J	106	112	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	20	25	anti-parallel
Strand 3	K	70	74	anti-parallel
Strand 4	K	66	67	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	105	106	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	44	49	anti-parallel
Strand 3	K	33	38	anti-parallel
Strand 4	K	89	90	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	44	49	anti-parallel
Strand 3	K	33	38	anti-parallel
Strand 4	K	85	86	anti-parallel
Strand 5	K	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1P84

Analysis of interatomic Contacts of Structural Units in PDB entry:
1P84