Analysis of interatomic Contacts of Structural Units in PDB entry:
1P8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P8Z entry

There are 2 chains in PDB entry 1P8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 VAL 26GLU 156
A
 THR 6VAL 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 1P8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
G
29 35Right-handed alpha
Helix 2
2
G
55 59Right-handed 310
Helix 3
3
G
94 112Right-handed alpha
Helix 4
4
G
127 133Right-handed alpha
Helix 5
5
A
55 61Right-handed alpha
Helix 6
6
A
62 65Right-handed 310
Helix 7
7
A
78 91Right-handed alpha
Helix 8
8
A
97 101Right-handed 310
Helix 9
9
A
112 126Right-handed alpha
Helix 10
10
A
137 145Right-handed alpha
Helix 11
11
A
181 196Right-handed alpha
Helix 12
12
A
202 217Right-handed alpha
Helix 13
13
A
222 233Right-handed alpha
Helix 14
14
A
252 263Right-handed alpha
Helix 15
15
A
264 268Right-handed 310
Helix 16
16
A
273 284Right-handed alpha
Helix 17
17
A
285 285Right-handed 310
Helix 18
18
A
286 288Right-handed 310
Helix 19
19
A
289 295Right-handed alpha
Helix 20
20
A
301 305Right-handed 310
Helix 21
21
A
308 321Right-handed alpha
Helix 22
22
A
334 336Right-handed 310
Helix 23
23
A
337 347Right-handed alpha
Helix 24
24
A
348 350Right-handed 310
Helix 25
25
A
351 356Right-handed alpha
Helix 26
26
A
359 366Right-handed alpha
Helix 27
27
A
367 370Right-handed 310
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There are 8 sheets in PDB entry 1P8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
50 53first strand
Strand 2
G
40 47anti-parallel
Strand 3
G
67 74anti-parallel
Strand 4
G
82 89anti-parallel
Strand 5
G
117 122parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
61 63first strand
Strand 2
G
139 141parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 37anti-parallel
Strand 3
A
66 68anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il