Analysis of interatomic Contacts of Structural Units in PDB entry:
1PB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PB7 entry

There is 1 chain in PDB entry 1PB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4SER 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1PB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 79Right-handed alpha
Helix 2
2
A
107 115Right-handed alpha
Helix 3
3
A
128 133Right-handed alpha
Helix 4
4
A
161 166Right-handed alpha
Helix 5
5
A
179 187Right-handed alpha
Helix 6
6
A
188 190Right-handed 310
Helix 7
7
A
191 199Right-handed alpha
Helix 8
8
A
205 215Right-handed alpha
Helix 9
9
A
225 235Right-handed alpha
Helix 10
10
A
260 274Right-handed alpha
Helix 11
11
A
275 285Right-handed alpha
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There are 4 sheets in PDB entry 1PB7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
59 64anti-parallel
Strand 3
A
42 46anti-parallel
Strand 4
A
82 86parallel
Strand 5
A
6 10parallel
Strand 6
A
120 121parallel
Strand 7
A
253 255anti-parallel
Strand 8
A
135 137anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
104 106anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
142 151anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
173 174parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
142 151anti-parallel
Strand 3
A
238 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il