Analysis of interatomic Contacts of Structural Units in PDB entry:
1PGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PGE entry

There are 2 chains in PDB entry 1PGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 33PRO 583
B
VAL 33PRO 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 1PGE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
35 38Right-handed 310
Helix 2
2
A
74 82Right-handed alpha
Helix 3
3
A
86 94Right-handed alpha
Helix 4
4
A
97 105Right-handed alpha
Helix 5
5
A
108 123Right-handed alpha
Helix 6
6
A
139 143Right-handed alpha
Helix 7
7
A
174 181Right-handed alpha
Helix 8
8
A
196 208Right-handed alpha
Helix 9
9
A
231 234Right-handed alpha
Helix 10
10
A
238 244Right-handed alpha
Helix 11
11
A
281 283Right-handed 310
Helix 12
12
A
290 293Right-handed 310
Helix 13
13
A
296 319Right-handed alpha
Helix 14
14
A
325 346Right-handed alpha
Helix 15
15
A
348 353Right-handed alpha
Helix 16
16
A
363 366Right-handed 310
Helix 17
17
A
379 385Right-handed alpha
Helix 18
18
A
388 390Right-handed 310
Helix 19
19
A
404 407Right-handed alpha
Helix 20
20
A
413 417Right-handed alpha
Helix 21
21
A
419 428Right-handed alpha
Helix 22
22
A
442 457Right-handed 310
Helix 23
23
A
463 469Right-handed alpha
Helix 24
24
A
478 481Right-handed alpha
Helix 25
25
A
486 495Right-handed alpha
Helix 26
26
A
498 500Right-handed 310
Helix 27
27
A
503 509Right-handed alpha
Helix 28
28
A
520 535Right-handed alpha
Helix 29
29
A
538 540Right-handed 310
Helix 30
30
A
547 550Right-handed 310
Helix 31
31
A
553 561Right-handed alpha
Helix 32
32
A
564 569Right-handed alpha
Helix 33
33
B
35 38Right-handed 310
Helix 34
34
B
74 82Right-handed alpha
Helix 35
35
B
86 94Right-handed alpha
Helix 36
36
B
97 105Right-handed alpha
Helix 37
37
B
108 123Right-handed alpha
Helix 38
38
B
139 143Right-handed alpha
Helix 39
39
B
174 181Right-handed alpha
Helix 40
40
B
196 208Right-handed alpha
Helix 41
41
B
231 234Right-handed alpha
Helix 42
42
B
238 244Right-handed alpha
Helix 43
43
B
281 283Right-handed 310
Helix 44
44
B
290 293Right-handed 310
Helix 45
45
B
296 319Right-handed alpha
Helix 46
46
B
325 346Right-handed alpha
Helix 47
47
B
348 353Right-handed alpha
Helix 48
48
B
363 366Right-handed 310
Helix 49
49
B
379 385Right-handed alpha
Helix 50
50
B
388 390Right-handed 310
Helix 51
51
B
404 407Right-handed alpha
Helix 52
52
B
413 417Right-handed alpha
Helix 53
53
B
419 428Right-handed alpha
Helix 54
54
B
442 457Right-handed 310
Helix 55
55
B
463 469Right-handed alpha
Helix 56
56
B
478 481Right-handed alpha
Helix 57
57
B
486 495Right-handed alpha
Helix 58
58
B
498 500Right-handed 310
Helix 59
59
B
503 509Right-handed alpha
Helix 60
60
B
520 535Right-handed alpha
Helix 61
61
B
538 540Right-handed 310
Helix 62
62
B
547 550Right-handed 310
Helix 63
63
B
553 561Right-handed alpha
Helix 64
64
B
564 569Right-handed alpha
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There are 6 sheets in PDB entry 1PGE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 50first strand
Strand 2
A
54 58anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
254 257first strand
Strand 2
A
260 263anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
395 397first strand
Strand 2
A
400 402anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 50first strand
Strand 2
B
54 58anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
254 257first strand
Strand 2
B
260 263anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
395 397first strand
Strand 2
B
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il