Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJX entry

There is 1 chain in PDB entry 1PJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1PHE 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 1PJX. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
304 308Right-handed 310
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There are 8 sheets in PDB entry 1PJX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
5 6first strand
Strand 2
A
261 264parallel
Strand 3
A
248 252anti-parallel
Strand 4
A
239 244anti-parallel
Strand 5
A
227 233anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 14first strand
Strand 2
A
291 296anti-parallel
Strand 3
A
281 286anti-parallel
Strand 4
A
270 275anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 25first strand
Strand 2
A
31 35anti-parallel
Strand 3
A
47 51anti-parallel
Strand 4
A
58 62anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 40first strand
Strand 2
A
43 44anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
65 66first strand
Strand 2
A
69 70anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
73 78first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
103 105anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 124first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
153 158anti-parallel
Strand 4
A
164 171anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 181first strand
Strand 2
A
187 194anti-parallel
Strand 3
A
199 207anti-parallel
Strand 4
A
210 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il