Analysis of interatomic Contacts of Structural Units in PDB entry:
1PL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PL8 entry

There are 4 chains in PDB entry 1PL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 1PRO 356
B
ALA 1PRO 356
C
ALA 1PRO 356
D
ALA 1PRO 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 1PL8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
44 54Right-handed alpha
Helix 2
2
A
102 107Right-handed alpha
Helix 3
3
A
109 113Right-handed 310
Helix 4
4
A
147 168Right-handed alpha
Helix 5
5
A
181 194Right-handed alpha
Helix 6
6
A
205 215Right-handed alpha
Helix 7
7
A
227 240Right-handed alpha
Helix 8
8
A
252 263Right-handed alpha
Helix 9
9
A
282 289Right-handed alpha
Helix 10
10
A
302 312Right-handed alpha
Helix 11
11
A
317 319Right-handed 310
Helix 12
12
A
329 339Right-handed alpha
Helix 13
13
B
44 54Right-handed alpha
Helix 14
14
B
102 107Right-handed alpha
Helix 15
15
B
109 113Right-handed 310
Helix 16
16
B
147 168Right-handed alpha
Helix 17
17
B
181 194Right-handed alpha
Helix 18
18
B
205 215Right-handed alpha
Helix 19
19
B
227 240Right-handed alpha
Helix 20
20
B
252 263Right-handed alpha
Helix 21
21
B
282 289Right-handed alpha
Helix 22
22
B
302 312Right-handed alpha
Helix 23
23
B
317 319Right-handed 310
Helix 24
24
B
329 339Right-handed alpha
Helix 25
25
C
44 54Right-handed alpha
Helix 26
26
C
102 107Right-handed alpha
Helix 27
27
C
109 113Right-handed 310
Helix 28
28
C
147 168Right-handed alpha
Helix 29
29
C
181 194Right-handed alpha
Helix 30
30
C
205 215Right-handed alpha
Helix 31
31
C
227 240Right-handed alpha
Helix 32
32
C
252 263Right-handed alpha
Helix 33
33
C
282 289Right-handed alpha
Helix 34
34
C
302 312Right-handed alpha
Helix 35
35
C
317 319Right-handed 310
Helix 36
36
C
329 339Right-handed alpha
Helix 37
37
D
44 54Right-handed alpha
Helix 38
38
D
102 107Right-handed alpha
Helix 39
39
D
109 113Right-handed 310
Helix 40
40
D
147 168Right-handed alpha
Helix 41
41
D
181 194Right-handed alpha
Helix 42
42
D
205 215Right-handed alpha
Helix 43
43
D
227 240Right-handed alpha
Helix 44
44
D
252 263Right-handed alpha
Helix 45
45
D
282 289Right-handed alpha
Helix 46
46
D
302 312Right-handed alpha
Helix 47
47
D
317 319Right-handed 310
Helix 48
48
D
329 339Right-handed alpha
Back to top of page

There are 24 sheets in PDB entry 1PL8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 23first strand
Strand 2
A
9 15anti-parallel
Strand 3
A
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
131 135first strand
Strand 2
A
33 43anti-parallel
Strand 3
A
70 78anti-parallel
Strand 4
A
90 93anti-parallel
Strand 5
A
139 141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
131 135first strand
Strand 2
A
33 43anti-parallel
Strand 3
A
344 348anti-parallel
Strand 4
A
321 326parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
55 56first strand
Strand 2
A
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
96 97first strand
Strand 2
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 222first strand
Strand 2
A
198 203parallel
Strand 3
A
174 178parallel
Strand 4
A
245 248parallel
Strand 5
A
268 271parallel
Strand 6
A
292 295parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
18 23first strand
Strand 2
B
9 15anti-parallel
Strand 3
B
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
131 135first strand
Strand 2
B
33 43anti-parallel
Strand 3
B
70 78anti-parallel
Strand 4
B
90 93anti-parallel
Strand 5
B
139 141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
131 135first strand
Strand 2
B
33 43anti-parallel
Strand 3
B
344 348anti-parallel
Strand 4
B
321 326parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
55 56first strand
Strand 2
B
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 97first strand
Strand 2
B
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
219 222first strand
Strand 2
B
198 203parallel
Strand 3
B
174 178parallel
Strand 4
B
245 248parallel
Strand 5
B
268 271parallel
Strand 6
B
292 295parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
18 23first strand
Strand 2
C
9 15anti-parallel
Strand 3
C
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
131 135first strand
Strand 2
C
33 43anti-parallel
Strand 3
C
70 78anti-parallel
Strand 4
C
90 93anti-parallel
Strand 5
C
139 141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
131 135first strand
Strand 2
C
33 43anti-parallel
Strand 3
C
344 348anti-parallel
Strand 4
C
321 326parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
55 56first strand
Strand 2
C
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
96 97first strand
Strand 2
C
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
219 222first strand
Strand 2
C
198 203parallel
Strand 3
C
174 178parallel
Strand 4
C
245 248parallel
Strand 5
C
268 271parallel
Strand 6
C
292 295parallel
Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
18 23first strand
Strand 2
D
9 15anti-parallel
Strand 3
D
65 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
131 135first strand
Strand 2
D
33 43anti-parallel
Strand 3
D
70 78anti-parallel
Strand 4
D
90 93anti-parallel
Strand 5
D
139 141anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
131 135first strand
Strand 2
D
33 43anti-parallel
Strand 3
D
344 348anti-parallel
Strand 4
D
321 326parallel
Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
55 56first strand
Strand 2
D
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
96 97first strand
Strand 2
D
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
219 222first strand
Strand 2
D
198 203parallel
Strand 3
D
174 178parallel
Strand 4
D
245 248parallel
Strand 5
D
268 271parallel
Strand 6
D
292 295parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il