Analysis of interatomic Contacts of Structural Units in PDB entry:
1PMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PMK entry

There are 2 chains in PDB entry 1PMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 1CYS 80
B
CYS 1CYS 80
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page
There are no helices in PDB entry 1PMK


There are 6 sheets in PDB entry 1PMK. Click on sheet of interest to get list of strands forming it: SA1, SA2, SA3, SB1, SB2, SB3,

There are 2 strands in SA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
14 16first strand
Strand 2
A
20 22anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in SA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 23first strand
Strand 2
A
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in SA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 65first strand
Strand 2
A
71 75anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in SB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
14 16first strand
Strand 2
B
20 22anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in SB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
21 23first strand
Strand 2
B
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in SB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
61 65first strand
Strand 2
B
71 75anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il