Analysis of interatomic Contacts of Structural Units in PDB entry:
1PTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PTH entry

There are 4 chains in PDB entry 1PTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 33PHE 529
A
 LEU 531PRO 583
B
 VAL 33PHE 529
B
 LEU 531PRO 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 1PTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 38Right-handed 310
Helix 2
2
A
74 82Right-handed alpha
Helix 3
3
A
86 94Right-handed alpha
Helix 4
4
A
97 105Right-handed alpha
Helix 5
5
A
108 123Right-handed alpha
Helix 6
6
A
139 143Right-handed alpha
Helix 7
7
A
174 181Right-handed alpha
Helix 8
8
A
196 208Right-handed alpha
Helix 9
9
A
231 234Right-handed alpha
Helix 10
10
A
238 244Right-handed alpha
Helix 11
11
A
281 283Right-handed 310
Helix 12
12
A
290 293Right-handed 310
Helix 13
13
A
296 319Right-handed alpha
Helix 14
14
A
325 346Right-handed alpha
Helix 15
15
A
348 353Right-handed alpha
Helix 16
16
A
363 366Right-handed 310
Helix 17
17
A
379 384Right-handed alpha
Helix 18
18
A
388 390Right-handed 310
Helix 19
19
A
404 407Right-handed alpha
Helix 20
20
A
413 417Right-handed alpha
Helix 21
21
A
419 428Right-handed alpha
Helix 22
22
A
442 458Right-handed 310
Helix 23
23
A
463 469Right-handed alpha
Helix 24
24
A
478 481Right-handed alpha
Helix 25
25
A
486 495Right-handed alpha
Helix 26
26
A
498 500Right-handed 310
Helix 27
27
A
503 509Right-handed alpha
Helix 28
28
A
520 535Right-handed alpha
Helix 29
29
A
538 540Right-handed 310
Helix 30
30
A
553 561Right-handed alpha
Helix 31
31
A
564 571Right-handed alpha
Helix 32
32
B
35 38Right-handed 310
Helix 33
33
B
74 82Right-handed alpha
Helix 34
34
B
86 94Right-handed alpha
Helix 35
35
B
97 105Right-handed alpha
Helix 36
36
B
108 123Right-handed alpha
Helix 37
37
B
139 143Right-handed alpha
Helix 38
38
B
174 181Right-handed alpha
Helix 39
39
B
196 208Right-handed alpha
Helix 40
40
B
231 234Right-handed alpha
Helix 41
41
B
238 244Right-handed alpha
Helix 42
42
B
281 283Right-handed 310
Helix 43
43
B
290 293Right-handed 310
Helix 44
44
B
296 319Right-handed alpha
Helix 45
45
B
325 346Right-handed alpha
Helix 46
46
B
348 353Right-handed alpha
Helix 47
47
B
363 366Right-handed 310
Helix 48
48
B
379 384Right-handed alpha
Helix 49
49
B
388 390Right-handed 310
Helix 50
50
B
404 407Right-handed alpha
Helix 51
51
B
413 417Right-handed alpha
Helix 52
52
B
419 428Right-handed alpha
Helix 53
53
B
442 458Right-handed 310
Helix 54
54
B
463 469Right-handed alpha
Helix 55
55
B
478 481Right-handed alpha
Helix 56
56
B
486 495Right-handed alpha
Helix 57
57
B
498 500Right-handed 310
Helix 58
58
B
503 509Right-handed alpha
Helix 59
59
B
520 535Right-handed alpha
Helix 60
60
B
538 540Right-handed 310
Helix 61
61
B
553 561Right-handed alpha
Helix 62
62
B
564 571Right-handed alpha
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There are 6 sheets in PDB entry 1PTH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
55 58anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
260 262anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
400 402anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
55 58anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 257first strand
Strand 2
B
260 262anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
400 402anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il