Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q8X entry

There is 1 chain in PDB entry 1Q8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1Q8X. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
28 31Right-handed 310
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
66 74Right-handed alpha
Helix 5
5
A
110 113Right-handed 310
Helix 6
6
A
114 129Right-handed alpha
Helix 7
7
A
139 144Right-handed alpha
Helix 8
8
A
145 150Right-handed alpha
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There are 3 sheets in PDB entry 1Q8X. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
33 40first strand
Strand 2
A
47 56anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
81 83first strand
Strand 2
A
95 104anti-parallel
Strand 3
A
86 90anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
81 83first strand
Strand 2
A
95 104anti-parallel
Strand 3
A
133 134parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il