Analysis of interatomic Contacts of Structural Units in PDB entry:
1QGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QGY entry

There is 1 chain in PDB entry 1QGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9TYR 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1QGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 19Right-handed 310
Helix 2
2
A
116 122Right-handed alpha
Helix 3
3
A
156 170Right-handed 310
Helix 4
4
A
172 177Right-handed alpha
Helix 5
5
A
202 211Right-handed alpha
Helix 6
6
A
236 242Right-handed alpha
Helix 7
7
A
244 251Right-handed alpha
Helix 8
8
A
267 281Right-handed alpha
Helix 9
9
A
285 295Right-handed alpha
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There are 2 sheets in PDB entry 1QGY. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
129 133anti-parallel
Strand 4
A
21 30anti-parallel
Strand 5
A
40 46anti-parallel
Strand 6
A
94 100anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
257 262parallel
Strand 3
A
150 155parallel
Strand 4
A
187 193parallel
Strand 5
A
216 222parallel
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