Analysis of interatomic Contacts of Structural Units in PDB entry:
1QP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QP7 entry

There are 2 chains in PDB entry 1QP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
T 699 T 715
A
THR 3ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1QP7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 11Right-handed alpha
Helix 2
2
A
15 23Right-handed alpha
Helix 3
3
A
30 43Right-handed alpha
Helix 4
4
A
49 56Right-handed alpha
Helix 5
5
A
55 88Right-handed alpha
Helix 6
6
A
101 113Right-handed alpha
Helix 7
7
A
128 137Right-handed alpha
Helix 8
8
A
162 176Right-handed alpha
Helix 9
9
A
191 207Right-handed alpha
Helix 10
10
A
213 215Right-handed 310
Helix 11
11
A
223 234Right-handed alpha
Helix 12
12
A
248 260Right-handed alpha
Helix 13
13
A
280 282Right-handed 310
Helix 14
14
A
294 310Right-handed alpha
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There are 3 sheets in PDB entry 1QP7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 96first strand
Strand 2
A
61 66parallel
Strand 3
A
119 121parallel
Strand 4
A
142 144parallel
Strand 5
A
156 159parallel
Strand 6
A
318 320parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
181 184first strand
Strand 2
A
242 245parallel
Strand 3
A
270 272parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
289 291first strand
Strand 2
A
324 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il