Analysis of interatomic Contacts of Structural Units in PDB entry:
1QPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QPZ entry

There are 2 chains in PDB entry 1QPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
T 699 T 715
A
ALA 2ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 1QPZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
14 24Right-handed alpha
Helix 3
3
A
29 44Right-handed alpha
Helix 4
4
A
48 57Right-handed alpha
Helix 5
5
A
71 88Right-handed alpha
Helix 6
6
A
100 114Right-handed alpha
Helix 7
7
A
127 136Right-handed alpha
Helix 8
8
A
161 176Right-handed alpha
Helix 9
9
A
190 207Right-handed alpha
Helix 10
10
A
212 216Right-handed 310
Helix 11
11
A
222 235Right-handed alpha
Helix 12
12
A
247 261Right-handed alpha
Helix 13
13
A
279 283Right-handed 310
Helix 14
14
A
293 311Right-handed alpha
Helix 15
15
A
336 340Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1QPZ. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 96first strand
Strand 2
A
61 66parallel
Strand 3
A
118 121parallel
Strand 4
A
142 147parallel
Strand 5
A
156 159parallel
Strand 6
A
318 320parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
181 184first strand
Strand 2
A
242 245parallel
Strand 3
A
270 275parallel
Strand 4
A
288 291parallel
Strand 5
A
324 326anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il