Analysis of interatomic Contacts of Structural Units in PDB entry:
1QRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QRP entry

There is 1 chain in PDB entry 1QRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
VAL 1ALA 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1QRP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
E
47 52Right-handed alpha
Helix 2
2
E
57 61Right-handed 310
Helix 3
3
E
109 115Right-handed alpha
Helix 4
4
E
125 129Right-handed 310
Helix 5
5
E
129 133Right-handed 310
Helix 6
6
E
135 143Right-handed alpha
Helix 7
7
E
171 174Right-handed 310
Helix 8
8
E
224 235Right-handed alpha
Helix 9
9
E
248 255Right-handed 310
Helix 10
10
E
270 274Right-handed alpha
Helix 11
11
E
302 308Right-handed alpha
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There are 6 sheets in PDB entry 1QRP. Click on sheet of interest to get list of strands forming it: A, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
3 5first strand
Strand 2
E
164 167anti-parallel
Strand 3
E
150 154anti-parallel
Strand 4
E
309 314anti-parallel
Strand 5
E
319 324anti-parallel
Strand 6
E
180 183anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
191 194first strand
Strand 2
E
210 214anti-parallel
Strand 3
E
299 301parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
202 205first strand
Strand 2
E
196 199anti-parallel
Strand 3
E
258 262anti-parallel
Strand 4
E
265 269anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
221 223first strand
Strand 2
E
286 288parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
238 239first strand
Strand 2
E
245 247anti-parallel
Strand 3
E
281 284anti-parallel
Strand 4
E
275 278anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
292 293first strand
Strand 2
E
296 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il