Analysis of interatomic Contacts of Structural Units in PDB entry:
1QVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QVJ entry

There is 1 chain in PDB entry 1QVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 59LEU 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1QVJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
63 67Right-handed 310
Helix 2
2
A
81 85Right-handed 310
Helix 3
3
A
101 106Right-handed alpha
Helix 4
4
A
222 236Right-handed alpha
Helix 5
5
A
237 241Right-handed 310
Helix 6
6
A
244 259Right-handed alpha
Helix 7
7
A
292 297Right-handed alpha
Helix 8
8
A
323 336Right-handed alpha
Helix 9
9
A
344 348Right-handed 310
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There are 5 sheets in PDB entry 1QVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 100first strand
Strand 2
A
156 160parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
127 128first strand
Strand 2
A
131 132anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 143first strand
Strand 2
A
146 147anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
210 211first strand
Strand 2
A
197 204anti-parallel
Strand 3
A
166 178anti-parallel
Strand 4
A
278 289parallel
Strand 5
A
262 268anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
215 216first strand
Strand 2
A
166 178anti-parallel
Strand 3
A
197 204anti-parallel
Strand 4
A
306 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il