Analysis of interatomic Contacts of Structural Units in PDB entry:
1RC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RC7 entry

There are 5 chains in PDB entry 1RC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
G 1 C 10
C
G 11 C 20
D
G 21 C 30
E
G 31 C 40
A
MET 1SER 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1RC7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
17 25Right-handed alpha
Helix 3
3
A
36 59Right-handed alpha
Helix 4
4
A
63 75Right-handed alpha
Helix 5
5
A
76 86Right-handed alpha
Helix 6
6
A
87 92Right-handed 310
Helix 7
7
A
101 120Right-handed alpha
Helix 8
8
A
123 145Right-handed alpha
Helix 9
9
A
151 165Right-handed alpha
Helix 10
10
A
201 220Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1RC7.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 176first strand
Strand 2
A
183 190anti-parallel
Strand 3
A
193 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il