Analysis of interatomic Contacts of Structural Units in PDB entry:
1RGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RGI entry

There are 2 chains in PDB entry 1RGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
VAL 26ASP 371
A
THR 5PHE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1RGI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
G
29 35Right-handed alpha
Helix 2
2
G
55 59Right-handed 310
Helix 3
3
G
94 112Right-handed alpha
Helix 4
4
G
127 133Right-handed alpha
Helix 5
5
G
179 183Right-handed 310
Helix 6
6
G
206 223Right-handed alpha
Helix 7
7
G
240 248Right-handed alpha
Helix 8
8
G
260 268Right-handed alpha
Helix 9
9
G
295 299Right-handed 310
Helix 10
10
G
324 342Right-handed alpha
Helix 11
11
G
359 364Right-handed alpha
Helix 12
12
A
55 61Right-handed alpha
Helix 13
13
A
78 92Right-handed alpha
Helix 14
14
A
97 101Right-handed 310
Helix 15
15
A
112 126Right-handed alpha
Helix 16
16
A
137 145Right-handed alpha
Helix 17
17
A
172 175Right-handed 310
Helix 18
18
A
181 197Right-handed alpha
Helix 19
19
A
205 217Right-handed alpha
Helix 20
20
A
222 233Right-handed alpha
Helix 21
21
A
252 257Right-handed alpha
Helix 22
22
A
258 261Right-handed 310
Helix 23
23
A
263 268Right-handed 310
Helix 24
24
A
273 284Right-handed alpha
Helix 25
25
A
285 288Right-handed 310
Helix 26
26
A
289 295Right-handed alpha
Helix 27
27
A
301 306Right-handed 310
Helix 28
28
A
308 319Right-handed alpha
Helix 29
29
A
334 336Right-handed 310
Helix 30
30
A
337 349Right-handed alpha
Helix 31
31
A
350 353Right-handed 310
Helix 32
32
A
359 363Right-handed alpha
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There are 10 sheets in PDB entry 1RGI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
50 53first strand
Strand 2
G
41 47anti-parallel
Strand 3
G
67 75anti-parallel
Strand 4
G
81 89anti-parallel
Strand 5
G
116 122parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
61 63first strand
Strand 2
G
139 141parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
172 176first strand
Strand 2
G
161 166anti-parallel
Strand 3
G
188 193anti-parallel
Strand 4
G
196 201anti-parallel
Strand 5
G
230 235parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
284 289first strand
Strand 2
G
272 277anti-parallel
Strand 3
G
304 308anti-parallel
Strand 4
G
314 319anti-parallel
Strand 5
G
349 354parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 68anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il