Analysis of interatomic Contacts of Structural Units in PDB entry:
1RV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RV5 entry

There are 4 chains in PDB entry 1RV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 T 11
D
 A 1 T 11
A
 SER 2LYS 245
B
 SER 2LYS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1RV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 17Right-handed alpha
Helix 2
2
A
37 59Right-handed alpha
Helix 3
3
A
80 82Right-handed 310
Helix 4
4
A
125 127Right-handed 310
Helix 5
5
A
153 158Right-handed 310
Helix 6
6
A
173 176Right-handed alpha
Helix 7
7
A
196 201Right-handed alpha
Helix 8
8
A
209 217Right-handed alpha
Helix 9
9
A
223 226Right-handed alpha
Helix 10
10
A
233 241Right-handed alpha
Helix 11
12
B
37 59Right-handed alpha
Helix 12
13
B
125 127Right-handed 310
Helix 13
14
B
156 158Right-handed 310
Helix 14
15
B
173 176Right-handed alpha
Helix 15
16
B
196 201Right-handed alpha
Helix 16
17
B
209 218Right-handed alpha
Helix 17
18
B
223 228Right-handed alpha
Helix 18
19
B
233 241Right-handed alpha
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There are 4 sheets in PDB entry 1RV5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
30 32anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
86 96anti-parallel
Strand 4
A
128 139parallel
Strand 5
A
166 172anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
29 32anti-parallel
Strand 3
B
150 152anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
86 96anti-parallel
Strand 4
B
128 140parallel
Strand 5
B
163 172anti-parallel
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