Analysis of interatomic Contacts of Structural Units in PDB entry:
1RX0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1RX0 entry

There are 4 chains in PDB entry 1RX0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10GLU 393
B
 THR 10GLU 393
C
 SER 11GLU 393
D
 THR 10GLU 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 1RX0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 38Right-handed alpha
Helix 2
2
A
41 49Right-handed alpha
Helix 3
3
A
52 62Right-handed alpha
Helix 4
4
A
70 74Right-handed 310
Helix 5
5
A
79 92Right-handed alpha
Helix 6
6
A
94 115Right-handed alpha
Helix 7
7
A
116 129Right-handed alpha
Helix 8
8
A
146 150Right-handed 310
Helix 9
9
A
189 191Right-handed 310
Helix 10
10
A
242 280Right-handed alpha
Helix 11
11
A
290 320Right-handed alpha
Helix 12
12
A
324 351Right-handed alpha
Helix 13
13
A
352 357Right-handed 310
Helix 14
14
A
361 372Right-handed alpha
Helix 15
15
A
378 393Right-handed alpha
Helix 16
16
B
20 38Right-handed alpha
Helix 17
17
B
41 49Right-handed alpha
Helix 18
18
B
52 62Right-handed alpha
Helix 19
19
B
70 74Right-handed 310
Helix 20
20
B
79 92Right-handed alpha
Helix 21
21
B
94 115Right-handed alpha
Helix 22
22
B
116 129Right-handed alpha
Helix 23
23
B
146 150Right-handed 310
Helix 24
24
B
189 191Right-handed 310
Helix 25
25
B
242 280Right-handed alpha
Helix 26
26
B
290 320Right-handed alpha
Helix 27
27
B
324 351Right-handed alpha
Helix 28
28
B
352 357Right-handed 310
Helix 29
29
B
361 372Right-handed alpha
Helix 30
30
B
378 393Right-handed alpha
Helix 31
31
C
20 38Right-handed alpha
Helix 32
32
C
41 49Right-handed alpha
Helix 33
33
C
52 62Right-handed alpha
Helix 34
34
C
70 74Right-handed 310
Helix 35
35
C
79 92Right-handed alpha
Helix 36
36
C
94 115Right-handed alpha
Helix 37
37
C
116 129Right-handed alpha
Helix 38
38
C
146 150Right-handed 310
Helix 39
39
C
189 191Right-handed 310
Helix 40
40
C
242 280Right-handed alpha
Helix 41
41
C
290 320Right-handed alpha
Helix 42
42
C
324 352Right-handed alpha
Helix 43
43
C
353 357Right-handed 310
Helix 44
44
C
361 372Right-handed alpha
Helix 45
45
C
378 393Right-handed alpha
Helix 46
46
D
20 38Right-handed alpha
Helix 47
47
D
41 49Right-handed alpha
Helix 48
48
D
52 62Right-handed alpha
Helix 49
49
D
70 74Right-handed 310
Helix 50
50
D
79 92Right-handed alpha
Helix 51
51
D
94 115Right-handed alpha
Helix 52
52
D
116 129Right-handed alpha
Helix 53
53
D
146 150Right-handed 310
Helix 54
54
D
189 191Right-handed 310
Helix 55
55
D
242 280Right-handed alpha
Helix 56
56
D
290 320Right-handed alpha
Helix 57
57
D
324 351Right-handed alpha
Helix 58
58
D
352 357Right-handed 310
Helix 59
59
D
361 372Right-handed alpha
Helix 60
60
D
378 393Right-handed alpha
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There are 12 sheets in PDB entry 1RX0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
178 184parallel
Strand 3
A
193 199anti-parallel
Strand 4
A
236 237anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
160 171anti-parallel
Strand 3
A
221 232anti-parallel
Strand 4
A
205 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
285 286anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
178 184parallel
Strand 3
B
193 199anti-parallel
Strand 4
B
236 237anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 157first strand
Strand 2
B
160 171anti-parallel
Strand 3
B
221 232anti-parallel
Strand 4
B
205 207anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 282first strand
Strand 2
B
285 286anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 137first strand
Strand 2
C
178 184parallel
Strand 3
C
193 199anti-parallel
Strand 4
C
236 237anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 157first strand
Strand 2
C
160 171anti-parallel
Strand 3
C
221 232anti-parallel
Strand 4
C
205 207anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 282first strand
Strand 2
C
285 286anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
134 137first strand
Strand 2
D
178 184parallel
Strand 3
D
193 199anti-parallel
Strand 4
D
236 237anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 157first strand
Strand 2
D
160 171anti-parallel
Strand 3
D
221 232anti-parallel
Strand 4
D
205 207anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
281 282first strand
Strand 2
D
285 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il