Analysis of interatomic Contacts of Structural Units in PDB entry:
1SCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SCF entry

There are 4 chains in PDB entry 1SCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 11SER 141
B
ASN 11CYS 138
C
ASN 11PHE 126
D
ASN 11LYS 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1SCF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
46 62Right-handed 310
Helix 4
4
A
72 89Right-handed alpha
Helix 5
5
A
112 127Right-handed alpha
Helix 6
6
B
12 21Right-handed alpha
Helix 7
7
B
41 43Right-handed 310
Helix 8
8
B
46 62Right-handed 310
Helix 9
9
B
72 92Right-handed alpha
Helix 10
10
B
112 127Right-handed alpha
Helix 11
11
C
12 21Right-handed alpha
Helix 12
12
C
41 62Right-handed alpha
Helix 13
13
C
72 90Right-handed alpha
Helix 14
14
C
112 124Right-handed alpha
Helix 15
15
D
12 21Right-handed alpha
Helix 16
16
D
41 43Right-handed 310
Helix 17
17
D
46 62Right-handed 310
Helix 18
18
D
72 89Right-handed alpha
Helix 19
19
D
112 125Right-handed alpha
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There are 4 sheets in PDB entry 1SCF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 31first strand
Strand 2
A
107 109anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 31first strand
Strand 2
B
107 109anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 31first strand
Strand 2
C
107 109anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
29 31first strand
Strand 2
D
107 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il