Analysis of interatomic Contacts of Structural Units in PDB entry:
1SHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SHY entry

There are 2 chains in PDB entry 1SHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 495THR 722
B
 LYS 40ALA 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1SHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
534 536Right-handed 310
Helix 2
2
A
540 542Right-handed 310
Helix 3
3
A
638 646Right-handed alpha
Helix 4
4
A
712 721Right-handed alpha
Helix 5
5
B
230 232Right-handed 310
Helix 6
6
B
240 245Right-handed alpha
Helix 7
7
B
326 333Right-handed alpha
Helix 8
8
B
367 376Right-handed alpha
Helix 9
9
B
516 521Right-handed 310
Helix 10
10
B
525 531Right-handed alpha
Helix 11
11
B
532 532Right-handed 310
Helix 12
12
B
533 537Right-handed 310
Helix 13
13
B
547 551Right-handed 310
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There are 13 sheets in PDB entry 1SHY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
630 637anti-parallel
Strand 3
A
656 660anti-parallel
Strand 4
A
704 708anti-parallel
Strand 5
A
685 690anti-parallel
Strand 6
A
676 680anti-parallel
Strand 7
A
611 616anti-parallel
Strand 8
A
630 637anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
544 548anti-parallel
Strand 3
A
508 513anti-parallel
Strand 4
A
516 525anti-parallel
Strand 5
A
528 532anti-parallel
Strand 6
A
579 584anti-parallel
Strand 7
A
567 572anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
509 514anti-parallel
Strand 3
B
499 506anti-parallel
Strand 4
B
486 495anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 58first strand
Strand 2
B
61 66anti-parallel
Strand 3
B
69 74anti-parallel
Strand 4
B
80 85anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
111 113anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 123first strand
Strand 2
B
129 134anti-parallel
Strand 3
B
141 145anti-parallel
Strand 4
B
158 160anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 189first strand
Strand 2
B
192 199anti-parallel
Strand 3
B
214 219anti-parallel
Strand 4
B
226 227anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 189first strand
Strand 2
B
192 199anti-parallel
Strand 3
B
214 219anti-parallel
Strand 4
B
234 235anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 255first strand
Strand 2
B
258 264anti-parallel
Strand 3
B
276 282anti-parallel
Strand 4
B
292 299anti-parallel
Strand 5
B
418 419parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 255first strand
Strand 2
B
258 264anti-parallel
Strand 3
B
276 282anti-parallel
Strand 4
B
292 299anti-parallel
Strand 5
B
424 427parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 323first strand
Strand 2
B
341 349anti-parallel
Strand 3
B
356 366anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 447first strand
Strand 2
B
450 457anti-parallel
Strand 3
B
461 466anti-parallel
Strand 4
B
479 480anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 541first strand
Strand 2
B
544 546anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il