Analysis of interatomic Contacts of Structural Units in PDB entry:
1SOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1SOJ entry

There are 12 chains in PDB entry 1SOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 659	LYS 1073
B	GLU 656	LYS 1073
C	LEU 659	LYS 1073
D	GLU 656	LYS 1073
E	LEU 659	LYS 1073
F	GLU 656	LYS 1073
G	LEU 659	LYS 1073
H	GLU 656	LYS 1073
I	LEU 659	LYS 1073
J	GLU 656	LYS 1073
K	LEU 659	LYS 1073
L	GLU 656	LYS 1073

There are257 helices in PDB entry 1SOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	659	675	Right-handed alpha
Helix 2	2	A	680	689	Right-handed alpha
Helix 3	3	A	690	693	Right-handed 310
Helix 4	4	A	694	708	Right-handed alpha
Helix 5	5	A	708	713	Right-handed alpha
Helix 6	6	A	716	731	Right-handed alpha
Helix 7	7	A	738	753	Right-handed alpha
Helix 8	8	A	801	805	Right-handed 310
Helix 9	9	A	807	821	Right-handed alpha
Helix 10	10	A	829	836	Right-handed alpha
Helix 11	11	A	838	844	Right-handed alpha
Helix 12	12	A	848	865	Right-handed alpha
Helix 13	13	A	875	892	Right-handed alpha
Helix 14	14	A	893	896	Right-handed 310
Helix 15	15	A	897	910	Right-handed alpha
Helix 16	16	A	921	938	Right-handed alpha
Helix 17	17	A	939	943	Right-handed 310
Helix 18	18	A	944	969	Right-handed alpha
Helix 19	19	A	983	995	Right-handed alpha
Helix 20	20	A	995	1006	Right-handed alpha
Helix 21	21	A	1059	1073	Right-handed alpha
Helix 22	22	B	656	675	Right-handed alpha
Helix 23	23	B	680	689	Right-handed alpha
Helix 24	24	B	690	693	Right-handed 310
Helix 25	25	B	694	707	Right-handed alpha
Helix 26	26	B	708	713	Right-handed alpha
Helix 27	27	B	716	730	Right-handed alpha
Helix 28	28	B	738	753	Right-handed alpha
Helix 29	29	B	801	805	Right-handed 310
Helix 30	30	B	807	821	Right-handed alpha
Helix 31	31	B	829	836	Right-handed alpha
Helix 32	32	B	838	844	Right-handed alpha
Helix 33	33	B	848	865	Right-handed alpha
Helix 34	34	B	866	869	Right-handed 310
Helix 35	35	B	875	891	Right-handed alpha
Helix 36	36	B	892	896	Right-handed 310
Helix 37	37	B	897	910	Right-handed alpha
Helix 38	38	B	921	938	Right-handed alpha
Helix 39	39	B	939	943	Right-handed 310
Helix 40	40	B	944	969	Right-handed alpha
Helix 41	41	B	983	995	Right-handed alpha
Helix 42	42	B	995	1006	Right-handed alpha
Helix 43	43	B	1059	1071	Right-handed alpha
Helix 44	44	C	659	675	Right-handed alpha
Helix 45	45	C	680	688	Right-handed alpha
Helix 46	46	C	689	693	Right-handed 310
Helix 47	47	C	694	708	Right-handed alpha
Helix 48	48	C	708	713	Right-handed alpha
Helix 49	49	C	716	731	Right-handed alpha
Helix 50	50	C	738	753	Right-handed alpha
Helix 51	51	C	801	805	Right-handed 310
Helix 52	52	C	807	821	Right-handed alpha
Helix 53	53	C	829	836	Right-handed alpha
Helix 54	54	C	838	844	Right-handed alpha
Helix 55	55	C	848	865	Right-handed alpha
Helix 56	56	C	875	892	Right-handed alpha
Helix 57	57	C	893	896	Right-handed 310
Helix 58	58	C	897	910	Right-handed alpha
Helix 59	59	C	921	938	Right-handed alpha
Helix 60	60	C	939	943	Right-handed 310
Helix 61	61	C	944	969	Right-handed alpha
Helix 62	62	C	983	995	Right-handed alpha
Helix 63	63	C	995	1006	Right-handed alpha
Helix 64	64	C	1059	1073	Right-handed alpha
Helix 65	65	D	657	675	Right-handed alpha
Helix 66	66	D	680	689	Right-handed alpha
Helix 67	67	D	690	693	Right-handed 310
Helix 68	68	D	694	707	Right-handed alpha
Helix 69	69	D	708	713	Right-handed alpha
Helix 70	70	D	716	730	Right-handed alpha
Helix 71	71	D	738	753	Right-handed alpha
Helix 72	72	D	801	805	Right-handed 310
Helix 73	73	D	807	821	Right-handed alpha
Helix 74	74	D	829	836	Right-handed alpha
Helix 75	75	D	838	844	Right-handed alpha
Helix 76	76	D	848	865	Right-handed alpha
Helix 77	77	D	866	869	Right-handed 310
Helix 78	78	D	875	891	Right-handed alpha
Helix 79	79	D	892	896	Right-handed 310
Helix 80	80	D	897	910	Right-handed alpha
Helix 81	81	D	921	938	Right-handed alpha
Helix 82	82	D	939	943	Right-handed 310
Helix 83	83	D	944	969	Right-handed alpha
Helix 84	84	D	983	995	Right-handed alpha
Helix 85	85	D	995	1006	Right-handed alpha
Helix 86	86	D	1059	1071	Right-handed alpha
Helix 87	87	E	659	675	Right-handed alpha
Helix 88	88	E	680	689	Right-handed alpha
Helix 89	89	E	690	693	Right-handed 310
Helix 90	90	E	694	708	Right-handed alpha
Helix 91	91	E	708	713	Right-handed alpha
Helix 92	92	E	716	731	Right-handed alpha
Helix 93	93	E	738	753	Right-handed alpha
Helix 94	94	E	801	805	Right-handed 310
Helix 95	95	E	807	821	Right-handed alpha
Helix 96	96	E	829	836	Right-handed alpha
Helix 97	97	E	838	844	Right-handed alpha
Helix 98	98	E	848	865	Right-handed alpha
Helix 99	99	E	875	892	Right-handed alpha
Helix 100	100	E	893	896	Right-handed 310
Helix 101	101	E	897	910	Right-handed alpha
Helix 102	102	E	921	938	Right-handed alpha
Helix 103	103	E	939	943	Right-handed 310
Helix 104	104	E	944	969	Right-handed alpha
Helix 105	105	E	983	995	Right-handed alpha
Helix 106	106	E	995	1006	Right-handed alpha
Helix 107	107	E	1059	1073	Right-handed alpha
Helix 108	108	F	656	675	Right-handed alpha
Helix 109	109	F	680	689	Right-handed alpha
Helix 110	110	F	690	693	Right-handed 310
Helix 111	111	F	694	707	Right-handed alpha
Helix 112	112	F	708	713	Right-handed alpha
Helix 113	113	F	716	730	Right-handed alpha
Helix 114	114	F	738	753	Right-handed alpha
Helix 115	115	F	801	805	Right-handed 310
Helix 116	116	F	807	821	Right-handed alpha
Helix 117	117	F	829	836	Right-handed alpha
Helix 118	118	F	838	844	Right-handed alpha
Helix 119	119	F	848	865	Right-handed alpha
Helix 120	120	F	866	869	Right-handed 310
Helix 121	121	F	875	891	Right-handed alpha
Helix 122	122	F	892	896	Right-handed 310
Helix 123	123	F	897	910	Right-handed alpha
Helix 124	124	F	921	938	Right-handed alpha
Helix 125	125	F	939	943	Right-handed 310
Helix 126	126	F	944	969	Right-handed alpha
Helix 127	127	F	983	995	Right-handed alpha
Helix 128	128	F	995	1006	Right-handed alpha
Helix 129	129	F	1059	1071	Right-handed alpha
Helix 130	130	G	659	675	Right-handed alpha
Helix 131	131	G	680	689	Right-handed alpha
Helix 132	132	G	690	693	Right-handed 310
Helix 133	133	G	694	708	Right-handed alpha
Helix 134	134	G	708	713	Right-handed alpha
Helix 135	135	G	716	731	Right-handed alpha
Helix 136	136	G	738	753	Right-handed alpha
Helix 137	137	G	801	805	Right-handed 310
Helix 138	138	G	807	821	Right-handed alpha
Helix 139	139	G	829	836	Right-handed alpha
Helix 140	140	G	838	844	Right-handed alpha
Helix 141	141	G	848	865	Right-handed alpha
Helix 142	142	G	875	892	Right-handed alpha
Helix 143	143	G	893	896	Right-handed 310
Helix 144	144	G	897	910	Right-handed alpha
Helix 145	145	G	921	938	Right-handed alpha
Helix 146	146	G	939	943	Right-handed 310
Helix 147	147	G	944	969	Right-handed alpha
Helix 148	148	G	983	995	Right-handed alpha
Helix 149	149	G	995	1006	Right-handed alpha
Helix 150	150	G	1059	1073	Right-handed alpha
Helix 151	151	H	656	675	Right-handed alpha
Helix 152	152	H	680	689	Right-handed alpha
Helix 153	153	H	690	693	Right-handed 310
Helix 154	154	H	694	707	Right-handed alpha
Helix 155	155	H	708	713	Right-handed alpha
Helix 156	156	H	716	730	Right-handed alpha
Helix 157	157	H	738	753	Right-handed alpha
Helix 158	158	H	801	805	Right-handed 310
Helix 159	159	H	807	821	Right-handed alpha
Helix 160	160	H	829	836	Right-handed alpha
Helix 161	161	H	838	844	Right-handed alpha
Helix 162	162	H	848	865	Right-handed alpha
Helix 163	163	H	866	869	Right-handed 310
Helix 164	164	H	875	891	Right-handed alpha
Helix 165	165	H	892	896	Right-handed 310
Helix 166	166	H	897	910	Right-handed alpha
Helix 167	167	H	921	938	Right-handed alpha
Helix 168	168	H	939	943	Right-handed 310
Helix 169	169	H	944	969	Right-handed alpha
Helix 170	170	H	983	995	Right-handed alpha
Helix 171	171	H	995	1006	Right-handed alpha
Helix 172	172	H	1059	1071	Right-handed alpha
Helix 173	173	I	659	675	Right-handed alpha
Helix 174	174	I	680	689	Right-handed alpha
Helix 175	175	I	690	693	Right-handed 310
Helix 176	176	I	694	708	Right-handed alpha
Helix 177	177	I	708	713	Right-handed alpha
Helix 178	178	I	716	731	Right-handed alpha
Helix 179	179	I	738	753	Right-handed alpha
Helix 180	180	I	801	805	Right-handed 310
Helix 181	181	I	807	821	Right-handed alpha
Helix 182	182	I	829	836	Right-handed alpha
Helix 183	183	I	838	844	Right-handed alpha
Helix 184	184	I	848	865	Right-handed alpha
Helix 185	185	I	875	892	Right-handed alpha
Helix 186	186	I	898	910	Right-handed alpha
Helix 187	187	I	921	938	Right-handed alpha
Helix 188	188	I	939	943	Right-handed 310
Helix 189	189	I	944	969	Right-handed alpha
Helix 190	190	I	983	995	Right-handed alpha
Helix 191	191	I	995	1006	Right-handed alpha
Helix 192	192	I	1059	1073	Right-handed alpha
Helix 193	193	J	656	675	Right-handed alpha
Helix 194	194	J	680	689	Right-handed alpha
Helix 195	195	J	690	693	Right-handed 310
Helix 196	196	J	694	707	Right-handed alpha
Helix 197	197	J	708	713	Right-handed alpha
Helix 198	198	J	716	730	Right-handed alpha
Helix 199	199	J	738	753	Right-handed alpha
Helix 200	200	J	801	805	Right-handed 310
Helix 201	201	J	807	821	Right-handed alpha
Helix 202	202	J	829	836	Right-handed alpha
Helix 203	203	J	838	844	Right-handed alpha
Helix 204	204	J	848	865	Right-handed alpha
Helix 205	205	J	866	869	Right-handed 310
Helix 206	206	J	875	891	Right-handed alpha
Helix 207	207	J	892	896	Right-handed 310
Helix 208	208	J	897	910	Right-handed alpha
Helix 209	209	J	921	938	Right-handed alpha
Helix 210	210	J	939	943	Right-handed 310
Helix 211	211	J	944	969	Right-handed alpha
Helix 212	212	J	983	995	Right-handed alpha
Helix 213	213	J	995	1006	Right-handed alpha
Helix 214	214	J	1059	1071	Right-handed alpha
Helix 215	215	K	659	675	Right-handed alpha
Helix 216	216	K	680	688	Right-handed alpha
Helix 217	217	K	689	693	Right-handed 310
Helix 218	218	K	694	708	Right-handed alpha
Helix 219	219	K	708	713	Right-handed alpha
Helix 220	220	K	716	731	Right-handed alpha
Helix 221	221	K	738	753	Right-handed alpha
Helix 222	222	K	801	805	Right-handed 310
Helix 223	223	K	807	821	Right-handed alpha
Helix 224	224	K	829	836	Right-handed alpha
Helix 225	225	K	838	844	Right-handed alpha
Helix 226	226	K	848	865	Right-handed alpha
Helix 227	227	K	875	892	Right-handed alpha
Helix 228	228	K	893	896	Right-handed 310
Helix 229	229	K	897	910	Right-handed alpha
Helix 230	230	K	921	938	Right-handed alpha
Helix 231	231	K	939	943	Right-handed 310
Helix 232	232	K	944	969	Right-handed alpha
Helix 233	233	K	983	995	Right-handed alpha
Helix 234	234	K	995	1006	Right-handed alpha
Helix 235	235	K	1059	1073	Right-handed alpha
Helix 236	236	L	656	675	Right-handed alpha
Helix 237	237	L	680	689	Right-handed alpha
Helix 238	238	L	690	693	Right-handed 310
Helix 239	239	L	694	707	Right-handed alpha
Helix 240	240	L	708	713	Right-handed alpha
Helix 241	241	L	716	730	Right-handed alpha
Helix 242	242	L	738	753	Right-handed alpha
Helix 243	243	L	801	805	Right-handed 310
Helix 244	244	L	807	821	Right-handed alpha
Helix 245	245	L	829	836	Right-handed alpha
Helix 246	246	L	838	844	Right-handed alpha
Helix 247	247	L	848	865	Right-handed alpha
Helix 248	248	L	866	869	Right-handed 310
Helix 249	249	L	875	891	Right-handed alpha
Helix 250	250	L	892	896	Right-handed 310
Helix 251	251	L	897	910	Right-handed alpha
Helix 252	252	L	921	938	Right-handed alpha
Helix 253	253	L	939	943	Right-handed 310
Helix 254	254	L	944	969	Right-handed alpha
Helix 255	255	L	983	995	Right-handed alpha
Helix 256	256	L	995	1006	Right-handed alpha
Helix 257	257	L	1059	1071	Right-handed alpha

There are 18 sheets in PDB entry 1SOJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1012	1013	first strand
Strand 2	A	1057	1058	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	757	758	first strand
Strand 2	B	799	800	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1012	1013	first strand
Strand 2	B	1057	1058	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1012	1013	first strand
Strand 2	C	1057	1058	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	757	758	first strand
Strand 2	D	799	800	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1012	1013	first strand
Strand 2	D	1057	1058	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1012	1013	first strand
Strand 2	E	1057	1058	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	757	758	first strand
Strand 2	F	799	800	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1012	1013	first strand
Strand 2	F	1057	1058	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1012	1013	first strand
Strand 2	G	1057	1058	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	757	758	first strand
Strand 2	H	799	800	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1012	1013	first strand
Strand 2	H	1057	1058	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1012	1013	first strand
Strand 2	I	1057	1058	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	757	758	first strand
Strand 2	J	799	800	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1012	1013	first strand
Strand 2	J	1057	1058	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1012	1013	first strand
Strand 2	K	1057	1058	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	757	758	first strand
Strand 2	L	799	800	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1012	1013	first strand
Strand 2	L	1057	1058	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1SOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
1SOJ