Analysis of interatomic Contacts of Structural Units in PDB entry:
1SOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1SOX entry

There are 2 chains in PDB entry 1SOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 3ASP 466
B
SER 3ASP 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1SOX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
44 50Right-handed alpha
Helix 3
3
A
56 61Right-handed alpha
Helix 4
4
A
63 66Right-handed 310
Helix 5
5
A
68 77Right-handed alpha
Helix 6
6
A
121 124Right-handed alpha
Helix 7
7
A
132 134Right-handed 310
Helix 8
8
A
148 150Right-handed 310
Helix 9
9
A
167 173Right-handed alpha
Helix 10
10
A
190 194Right-handed alpha
Helix 11
11
A
219 226Right-handed alpha
Helix 12
12
A
258 262Right-handed alpha
Helix 13
13
A
296 298Right-handed 310
Helix 14
14
A
316 319Right-handed alpha
Helix 15
15
A
336 338Right-handed 310
Helix 16
16
A
444 446Right-handed 310
Helix 17
17
B
9 14Right-handed alpha
Helix 18
18
B
37 39Right-handed 310
Helix 19
19
B
44 50Right-handed alpha
Helix 20
20
B
56 61Right-handed alpha
Helix 21
21
B
63 66Right-handed 310
Helix 22
22
B
68 77Right-handed alpha
Helix 23
23
B
121 123Right-handed 310
Helix 24
24
B
167 172Right-handed alpha
Helix 25
25
B
190 196Right-handed alpha
Helix 26
26
B
219 225Right-handed alpha
Helix 27
27
B
258 262Right-handed alpha
Helix 28
28
B
281 283Right-handed 310
Helix 29
29
B
296 298Right-handed 310
Helix 30
30
B
316 319Right-handed alpha
Helix 31
31
B
336 338Right-handed 310
Helix 32
32
B
444 446Right-handed 310
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There are 12 sheets in PDB entry 1SOX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 26first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
78 81anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
163 166first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
303 309parallel
Strand 4
A
237 242anti-parallel
Strand 5
A
253 257anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
176 184first strand
Strand 2
A
209 218anti-parallel
Strand 3
A
269 274anti-parallel
Strand 4
A
288 290anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
411 419first strand
Strand 2
A
363 372anti-parallel
Strand 3
A
348 353anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
458 463first strand
Strand 2
A
424 433anti-parallel
Strand 3
A
379 385anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 111first strand
Strand 2
A
116 118anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
23 26first strand
Strand 2
B
29 32anti-parallel
Strand 3
B
78 81anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
163 166first strand
Strand 2
B
152 157anti-parallel
Strand 3
B
303 309parallel
Strand 4
B
237 242anti-parallel
Strand 5
B
253 257anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
177 184first strand
Strand 2
B
209 218anti-parallel
Strand 3
B
269 274anti-parallel
Strand 4
B
288 290anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
411 419first strand
Strand 2
B
363 372anti-parallel
Strand 3
B
348 353anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
458 463first strand
Strand 2
B
424 433anti-parallel
Strand 3
B
379 385anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 111first strand
Strand 2
B
116 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il